Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2386 122 1e-22 seq8312 84.2 2e-11 seq5349 82.4 9e-11 >seq2386 Length=46605 Score = 122 bits (134), Expect = 1e-22 Identities = 453/658 (69%), Gaps = 59/658 (9%) Strand=Plus/Minus Query 84078 CTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACA 84137 ||||| |||| | ||| || ||| |||| ||||| | ||||||||||| || | |||| Sbjct 37923 CTATCTACAACAGACTGGTTAAAGCTAAA-CCATTTAAGTTAAATGCCATAGTAC-AACA 37866 Query 84138 CCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAA 84197 || | ||| | |||||||| ||||| | ||||| || || | ||| || || | || Sbjct 37865 CCTAAAGCTGTTAACCAAATCCCAACTTCAGGCCATGC-GCAAGGAAGAAATGTAAAG-- 37809 Query 84198 CGACTAT----TGTTG-AAGGAAGCA--TACTGG--AAGATAAGACGA--CCGAAGTAGC 84246 | ||| ||||| || ||| ||||| ||||| | ||| || ||||| | Sbjct 37808 CCTCTAGAGTCTGTTGTAAACTAGCTGCTACTGCGCAAGATTAAACGCACCCAAAGTAAC 37749 Query 84247 CG-TGAGCAGCAACAATATTATAAGTTTCCTCT-TCT-TGACCGAACTT-GTAACCATAG 84302 | || ||||| ||||| || |||||||| ||| ||| || ||||| || |||||| || Sbjct 37748 CTATGTGCAGCTACAATGTTGTAAGTTTCTTCTATCTCTGTCCGAATTTTGTAACCGTA- 37690 Query 84303 TTTTGTGAGACATTTTCTGTA-GTTTCTCGGATTAGAGAAGAAGTGACAAGT-GAACCAT 84360 || || || ||| | ||||| || |||| | ||| | || || ||||||| Sbjct 37689 TTAACAGATTCAACTTCACTTCGTTTCACGTATTAAACTTGAATT-ACTAGAAGAACCAT 37631 Query 84361 GC-ATTGCAGAGA-ATAGAGCTCCACCGAATACA-CCAGCAACTCC---CAACATGTGAA 84414 || || ||| || ||| | |||| ||| ||| |||||||| || || ||| ||| Sbjct 37630 GCGATAGCACTGATATA-ATAACCAC-GAAAACATCCAGCAACACCAGCCATTATG-GAA 37574 Query 84415 ---AGGGATGCATAAGGATGTTATGTTCCGCCT---GGAAGACA-AGCATGTAGTTGAAC 84467 ||| ||||| | | ||||||||| || |||| || | |||| |||| || Sbjct 37573 TCCAGG--TGCATTAAAA-GTTATGTTCGAGCTTTTGGAAAACCGATCATGAAGTTAAAT 37517 Query 84468 GTT-CCTGAG--ATACCAAGTGGCATGCCATCAG-AGAAAGAACC-TTGCCCGAAAGGAT 84522 | | || || |||||| |||| || |||| ||||| ||| ||| | |||| | Sbjct 37516 GCTACCAGAACAATACCATAAAGCATACCGTCAGCAGAAACTACCATTGATCCGAAGGGT 37457 Query 84523 ACACAAGGAATACAGCAGATGCCGCTG-CAACTGGAGCAGAGTAAGCAAC-ACAGATCCA 84580 | | || ||||| ||||| || |||| | ||| || ||||| | || || | | ||| | Sbjct 37456 AAATTAG-AATACCGCAGA-GCTGCTGTCTACTTGA-CAGAGAATGCTACGAAACATCAA 37400 Query 84581 TGGACGCATACCGAGACGA--TATGAAAGTT-CCCATTCACGACCCATGTAAGCAAATGC 84637 ||||||||||| | || || ||||| |||||||||||||||| || | | || Sbjct 37399 -GGACGCATACCTAAACACCGTAGCTAAGTTTCCCATTCACGACCCATCCAACAAGAAGC 37341 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATT-ATATAGCCATTC 84694 |||||| | ||| || || || | | ||| ||||| |||||||| |||| |||||| Sbjct 37340 ACCAATTAAGAAATGGAATACGATTAATTGGTAAGG-CCACCATTGGTATAACCATTC 37284 >seq8312 Length=1178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 149449 GCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAAAT 149508 ||||||| |||||||| |||||||| |||| ||||||| |||||| ||| ||||||||| Sbjct 580 GCGGGATGGAGCAGTCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 639 Query 149509 CCACCTCCCGC 149519 || ||||||| Sbjct 640 CCTACTCCCGC 650 >seq5349 Length=5186 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 149445 TATTGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTC 149504 ||| ||||||| |||||| | |||||||| |||| ||||||| |||||| ||| ||||| Sbjct 3685 TATCGCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTC 3744 Query 149505 AAATCCACCTCCCGC 149519 |||||| ||||||| Sbjct 3745 AAATCCTACTCCCGC 3759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571178432959160