Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3163 109 4e-18 seq3429 96.9 3e-14 >seq3163 Length=20664 Score = 109 bits (120), Expect = 4e-18 Identities = 169/231 (73%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 550314 AATTTTCACCAGAACAAATTTCATCTATGGTT-TTAATGAAAATGAAACAAACAGCCAGT 550372 ||| | ||||| || ||||||| | ||||| || | |||||||| |||| || Sbjct 19209 AATATACACCACAAGAAATTTCGGCAATGGTGCTTCAAAAAAATGAAGAAAACTGCTGAA 19268 Query 550373 GCTTTTGTT-GGTCAAGAAGTTACGGATGCAGTAATAACT-GTACCAGCATATTTTAATG 550430 | ||| || || ||||| |||| || |||||||| || ||||| ||||| ||||| | Sbjct 19269 GGATTTCTTAGGGCAAGAGGTTAAAGAAGCAGTAATTACAAGTACCTGCATACTTTAACG 19328 Query 550431 ACTC-ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTA-ATGTTCTTCG 550488 | | |||||| |||||||||||||| || || ||||||| ||| | ||| || Sbjct 19329 ATGCCACAACG-CAAGCTACTAAAGAAGCAGGTGAAATTGCTG--TTTAGAGGTTAAACG 19385 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACA 550539 |||||| || || |||||||| ||||| || || || ||||| || ||||| Sbjct 19386 TATTATAAACGAGCCTACTGC-GCTGCCCTAGCCTACGGACTAGACAAACA 19435 >seq3429 Length=16784 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||||||||| |||||| | ||| | || || ||||| || || |||||| |||| Sbjct 2042 GAAAATGAAGTCAACAGCAGAAGATTTCTTGGGACAGGAAGTAACCGAAGCAGTAGTAAC 2101 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||||| || || || |||||| | | | |||||||| ||||| || || | || || Sbjct 2102 CGTACCGGCGTACTTCAATGACGCTGAGAGACAAGCTACCAAAGAGGCAGGTCAGATCGC 2161 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 |||| | | || | || |||||||| |||||||||||||| || || || || || Sbjct 2162 TGGATTGGAAGTGAAAAGAATCATCAATGAGCCTACTGCTGCTGCGCTGGCTTACGGTCT 2221 Query 550531 TGATAA 550536 ||||| Sbjct 2222 GGATAA 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028591208135230