Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq4766 95.1 2e-14 seq6499 93.3 8e-14 seq8312 89.7 9e-13 seq5349 84.2 4e-11 >seq4766 Length=7553 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 |||||||||||||||||||| | |||||||||| ||||||||||| ||||||| ||| Sbjct 3699 TTTGATGCGGGGTGGAGCAGCCAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGT 3758 Query 133017 TCAAATCCCTCCCCCGCATCCACAAGC 133043 || ||||| ||||||| ||| |||| Sbjct 3759 TCGAATCCTGCCCCCGCTACCAGAAGC 3785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132958 TTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTT 133017 ||||||||||||||||||| | |||||||||| ||||||||||| ||||||| |||| Sbjct 3452 TTGATGCGGGGTGGAGCAGCCAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTT 3511 Query 133018 CAAATCCCTCCCCCGC 133033 | ||||| ||||||| Sbjct 3512 CGAATCCTGCCCCCGC 3527 >seq6499 Length=2643 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 2115 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTTGGTTCAAAT 2056 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 2055 CCAACCCCCGCAACCA 2040 >seq8312 Length=1178 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 580 GCGGGATGGAGCAGTCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 639 Query 133023 CCCTCCCCCGCATCCACAA 133041 || | |||||| ||| || Sbjct 640 CCTACTCCCGCAACCAAAA 658 >seq5349 Length=5186 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 3689 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 3748 Query 133023 CCCTCCCCCGCATCCACAA 133041 || | |||||| ||| || Sbjct 3749 CCTACTCCCGCAACCAAAA 3767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895617176514840