Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq436 102 2e-16 seq1406 96.9 6e-15 seq3576 84.2 4e-11 seq821 84.2 4e-11 >seq436 Length=314818 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||||| |||||| |||||||||| ||||| |||||||||||| ||||| | Sbjct 92622 TAGAGCAGACAGGCGAAGTCCGTGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGCTG 92563 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAA 48222 ||||| || || ||||||| |||| || || |||||||| Sbjct 92562 AAGCACAGCCCCGGCATGAGTCCCCGCTTCTTCAGCCAGAA 92522 >seq1406 Length=118068 Score = 96.9 bits (106), Expect = 6e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||| ||||||||| |||||||||||| |||| ||||| || || ||| ||||||||| Sbjct 85478 GTGAAGGGCTCGACGCTCTCGTTGTTGCCCAAGATCTGCGCGGTCGAGGCCGTGGGCATG 85419 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCG 213056 || ||||||||||| |||||||| ||||||||| Sbjct 85418 GGCGCCACCAGGAGGGAGTTCCTCAGACCGTGCTCG 85383 >seq3576 Length=15149 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 213111 TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAG 213170 || |||||||||||||||||||| || || || ||| || || |||| ||| | | Sbjct 5231 TTGACGTTCCACATGTCAAACTGGAAAATACCCTTGGACATAGGAGACCCCTCGTATGTG 5172 Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 || || || |||| | || ||||| || ||| | |||| || ||||||||||| Sbjct 5171 GAATATGGTCCATCCCTTTTCGCCAGGTCTATGGAAGAATGCACTGCTCCGTAGTAGATG 5112 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTT 213256 | ||| ||||| || |||||||||| Sbjct 5111 GATTCGAATATATCTTTGTTGAGCTT 5086 >seq821 Length=203339 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 213725 GTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 ||| ||||| | ||| || | |||||| || | | | || ||||| || ||||||| Sbjct 101491 GTACAGCTCTTCGAACTCTTCCCCCCAGCACTCCGAC-AGCCCCGGGCACTGCGCGGGAC 101549 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 ||||||||| ||| ||||||| || || |||| ||||||||||||||| | ||||| Sbjct 101550 ACATGAGGCACCACTCCCCGTTCTCCTCCACCCTCTTCATGAACAGGTCCGGAATCCACA 101609 Query 213844 GCGCGGTGAACAGGTCCCTGGTC 213866 | || ||| || |||||| || Sbjct 101610 GACCGTAGAAAAGATCCCTGATC 101632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931377618279680