Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1406 93.3 8e-14 seq436 91.5 3e-13 >seq1406 Length=118068 Score = 93.3 bits (102), Expect = 8e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||||||||| | | | ||||| || || ||||||||| | |||| || | |||||| Sbjct 75250 GTCCTCCTTCATGGTGAGCAGGAAGCAGCTCGACATCTGCGGCTTGGGGGTGCCGGCGTT 75191 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG-ACATCAGATCGTACGTCTCTA 222497 || || || || ||||||| || ||| |||| || | |||| || ||||||||||| | Sbjct 75190 GAAGAGGGTCGGCGTGGCGTGGGTGAAG-AGCCGCTGGGACATGAGGTCGTACGTCTCGA 75132 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGG 222557 ||| || ||||||| ||| ||| || || | | |||| ||||| ||| | Sbjct 75131 TGACCTTGTCGATGTTCTCCTTGTGGATGCCCACCGACACGCGCATGATCATGTGCTGCG 75072 Query 222558 GCCTCTCCAC 222567 |||||||||| Sbjct 75071 GCCTCTCCAC 75062 >seq436 Length=314818 Score = 91.5 bits (100), Expect = 3e-13 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||| | |||||||| ||| || |||||| |||||| ||||||| ||| ||||||||| Sbjct 92516 GCCGTGTTCTGGCTGAAGAAGC-GGGGACTCATGCCGGGGCTGTGCTTCAGCAACGAGCT 92574 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||| | |||||||| | |||| || || ||||| ||||||||| Sbjct 92575 CATCAGCCGCGACGAGGGCTTGCACACGGACTTCGCCTGTCTGCTCTAC 92623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928690066066880