Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3163 87.8 1e-11 >seq3163 Length=20664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 189/273 (69%), Gaps = 10/273 (4%) Strand=Plus/Plus Query 474651 AATTTTCACCGGAACAAATTTCTTCAATGGTT-TTAGCCAAAATGAAACAAACCGCGAGC 474709 ||| | |||| || ||||||| ||||||| || |||||||| |||| || Sbjct 19209 AATATACACCACAAGAAATTTCGGCAATGGTGCTTCAAAAAAATGAAGAAAACTGCTGAA 19268 Query 474710 TCATATCTT-GGACAAGAAGTAACTGATGCAGTAATTAC-TGTTCCAGCATATTTTAATG 474767 || |||| || ||||| || | || ||||||||||| || || ||||| ||||| | Sbjct 19269 GGATTTCTTAGGGCAAGAGGTTAAAGAAGCAGTAATTACAAGTACCTGCATACTTTAACG 19328 Query 474768 AT-TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGT 474826 || | ||||| ||||| |||||||| || || |||||| || | | ||| |||| Sbjct 19329 ATGCCACAACG-CAAGCTACTAAAGAAGCAGGTGAAATTGC-TGTTTAGAGGTTAAACGT 19386 Query 474827 ATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAA 474886 ||||| || || || || || || || || || || || || || || | |||||| Sbjct 19387 ATTATAAACGAGCCTACTGC-GCTGCCCTAGCCTACGGACTAGACAAACA---AGACAAA 19442 Query 474887 GAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 ||| | || | || | ||||| ||||| ||| Sbjct 19443 GAAATGAAAATCGTAGTGTTTGACTGTGGTGGT 19475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267607540307396