Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq185 116 4e-21 seq1406 113 5e-20 >seq185 Length=475507 Score = 116 bits (128), Expect = 4e-21 Identities = 316/479 (66%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 175206 TGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATA 175265 |||||| ||||| || || || ||| | ||||| || |||||| | ||||| | || Sbjct 208449 TGACGCAGCCAAGTTCGAGCTGGAGGAGGTGGTGGACTTCCTCAAGAACCCCGATAAGTA 208508 Query 175266 TTTTGGAAG--TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACG 175323 ||| |||||||||||||||||| |||| | || | ||| || || || Sbjct 208509 CACC--AAGGTTGGTGCCAAGATCCCCCGTGGCGTGATCCTGGAAGGTCCTCCCGGGACC 208566 Query 175324 GGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGC 175383 || ||||| ||| |||| || ||| | || || || | ||||| |||||| Sbjct 208567 GGTAAGACGCTCATCGCGCGGGCCGTGGCCGGCGAGGCGGGCGTCCCCTTCATCGCCACG 208626 Query 175384 TCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTC 175443 |||| | | || ||||||||||| || || ||||||||| | || ||||| | Sbjct 208627 TCTGGGTCCGAGTTCGTGGAGATGTTCGTCGGCGTGGGTGCCGCGCGTGTGCGCGACTTG 208686 Query 175444 TTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTG 175503 || || | || || || || || || ||||||| || ||||| || || || Sbjct 208687 TTCGACAAGGCGAAGGAGAACTCGCCGTGCATCATCTTCATCGACGAGATCGACGCCGTT 208746 Query 175504 GGCAAGCAACGCAGC-GCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 ||| |||||| || || | | || | || || |||||| | || || || | || Sbjct 208747 GGCCGGCAACGTGGCAGCGGCATGGCTGGCGGC-AACGACGAGCGCGAGCAGACCCTCAA 208805 Query 175563 TCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGC 175622 || | || |||||||| ||||| | | | ||||| | | || || || || Sbjct 208806 CCAGATGCTGGTGGAGATGGACGGCTTCGTCGGGAACCCTGGCGTGATCGTCATGGCCGC 208865 Query 175623 CACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCA 175681 |||||| || | || ||||| || |||||||| || ||||| || || || || |||| Sbjct 208866 CACTAACCGTATCGACATCCTCGACGACGCCCTGCTCCGCCCCGGGCGCTTCGACCGCA 208924 >seq1406 Length=118068 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 |||| | || ||| ||||| ||||||| || | | ||||||||| ||| |||| | Sbjct 75063 TGGAGAGGCCGCAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGAGAACATCG 75122 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | ||| | ||||| |||||| |||||||| | | |||| ||||| || || | Sbjct 75123 ACAAGGTCATCGAGACGTACGACCTCATGTCCCAGCGGCTCTTCACCCACGCCACGCCGA 75182 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 |||||||||| || || || || | ||||||||||| || |||||||| || ||| | Sbjct 75183 CCCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGTCGAGCTGCTTCCTGCTCACCATGA 75242 Query 75384 AGGAGGACTCAATCAACGGTATCTA 75408 |||||||| ||| ||| ||||| Sbjct 75243 AGGAGGACAGCATCTCCGGGATCTA 75267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596470218961760