Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq4313 80.6 1e-10 >seq4313 Length=9799 Score = 80.6 bits (88), Expect = 1e-10 Identities = 290/418 (69%), Gaps = 38/418 (9%) Strand=Plus/Plus Query 51761 TTACCCTCAAACAC-CAGATCCCACATCTCATCGGCCTCTTTGGC-CTTCATGAAAGCGT 51818 ||||| |||| ||| |||||||||| | | || || | || | || ||||| | | Sbjct 7945 TTACCATCAACCACGCAGATCCCACGAC-CGTC--CCGCCTTACCGCTCCATGA--GGAT 7999 Query 51819 CGGTGATCAAGACGG---ACATGTTGAACATCCGCAGCCGGTTCGGATCCGACTTGGCCG 51875 |||| |||| || | |||| |||||||||||| ||| |||| || ||||| | Sbjct 8000 CGGTTATCAGCACCGCTGACAT--TGAACATCCGCAACCG--TCGGGATCGCATTGGC-G 8054 Query 51876 TGATGAAGTCTTTGATGTCGGGGTGATCGCAACGCATTGTTGCCATCATCGCGCCACGGC 51935 ||||| | ||| || || || || || ||| || ||||||||| | || | || Sbjct 8055 CAATGAATCGCTCGATATCCGG-TG-TCACAGCGCCATGCTGCCATCATTGGCCCCCCGC 8112 Query 51936 GGGACCCGGCAGACATG-AT-CGTGCGACACATCGCATCCCAGACA-TCCATGAAAGACA 51992 | || ||| | |||||| || |||||| | || || ||||||||| |||||||| |||| Sbjct 8113 GCGATCCGTCGGACATGCATACGTGCGGCCAAT-GC-TCCCAGACAGTCCATGAAGGACA 8170 Query 51993 GGGGACCAGAAGCA-TCCGCAGCAACACCTTTGACGATTGCACCCTTGGGGCGGATGGTG 52051 | | ||||| | || || || || ||| ||| |||||||||| | || ||| Sbjct 8171 CGCG-CCAGAGTCGCTCTGCCGCCACGCCT--GACCGC-GCACCCTTGGCG---ATCGTG 8223 Query 52052 CTGAAGTCATAGCCG-ATGCCGCCGCCCTGTTGCATGGTCAGCGCAGCTTCCTTCAGCAT 52110 | || |||||| |||| |||| || | ||||||||| || ||| | ||||| Sbjct 8224 AAAAGATCGTAGCCGCATGCGCACGCC-TGCT-CATGGTCAGGGC-GCT-CTTTCAGGCG 8279 Query 52111 GTCGAAGATGCCGCCCATGTC-GTCTGGCACGGTCCCCATGACAAAGCAGTTGAAGAG 52167 ||||| || ||||| || ||| | ||| | ||||||||||||||||||| || Sbjct 8280 CTCGAATTATCC-CCCATATCTGTCCG-CACCGCTGCCATGACAAAGCAGTTGAACAG 8335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182115174232080