Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2386 138 1e-27 >seq2386 Length=46605 Score = 138 bits (152), Expect = 1e-27 Identities = 552/802 (69%), Gaps = 73/802 (9%) Strand=Plus/Minus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCT-TTC-ATGCA---TAACT-TCCATA 7941 |||||||| ||||||| || || || || || | ||| |||| || | |||||| Sbjct 38035 GATGCTAAATCTAATG--AAATTATGAGCGTTACCATTCGATGCCCGTTATTTCTCCATA 37978 Query 7942 CCT-AAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-AT 7999 ||| || | ||| | ||| ||| |||| ||||||| | | | ||| | || || Sbjct 37977 CCTTAAATCTGCACGGTT--ATATGTCAGCCCATGTCGTTAATACACGACCTTCTACTAT 37920 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 | ||||| || ||||||||| |||| | ||||| ||||||||||| || | || ||| | Sbjct 37919 CTACAACAGACTGGTTAAAGCTAAACCATTTAAG-TTAAATGCCATAGTAC-AACACCTA 37862 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG-AAGACTTCTA 8118 || |||||||||| | || | || ||| || |||||||| || || | |||| Sbjct 37861 AAGCTGTTAACCAAATCCCAACTTCAGGCCATG-CGCAAGGAAGAAATGTAAAGCCTCTA 37803 Query 8119 ----CTGTTGTTAAAC--GATGCATACT--GGAAGATTAA--TCTACCAAAGTATCC-AT 8167 |||||| ||||| | ||| |||| | |||||||| | |||||||| || || Sbjct 37802 GAGTCTGTTG-TAAACTAGCTGC-TACTGCGCAAGATTAAACGCACCCAAAGTAACCTAT 37745 Query 8168 GAGCAGCAACAATATTATAGGTCTCTTCT-TCT-TGACC-AAACTTATAACCATAGTTCT 8224 | ||||| ||||| || || || |||||| ||| || || || || ||||| || || Sbjct 37744 GTGCAGCTACAATGTTGTAAGTTTCTTCTATCTCTGTCCGAATTTTGTAACCGTA-TTAA 37686 Query 8225 GAGACTCTTCTTCAGTT-GTCTCTCTGATTAGAGAAGATGTAACTA-AAGAACCGTGC-A 8281 ||| || ||||| || || || | |||| | || | |||| ||||||| ||| | Sbjct 37685 CAGATTCAACTTCACTTCGTTTCACGTATTAAACTTGA-ATTACTAGAAGAACCATGCGA 37627 Query 8282 TAGCACTGA-AGAGTGATCCAC-CGAACATACCTGCTACCCCTGCCA-TATGGAA---AG 8335 ||||||||| | | | | |||| ||||| || || || || |||| ||||||| || Sbjct 37626 TAGCACTGATATAAT-AACCACGAAAACAT-CCAGCAACACCAGCCATTATGGAATCCAG 37569 Query 8336 GATGCATAAGAATGTTATGCTC-TGC--TTGGAATA-CGAACATGAAGTTAAACG-TACC 8390 | ||||| | || |||||| || || |||||| | ||| |||||||||||| | |||| Sbjct 37568 G-TGCATTA-AAAGTTATGTTCGAGCTTTTGGAAAACCGATCATGAAGTTAAATGCTACC 37511 Query 8391 AGA--AATACCTAGAGGCATTCCATCAG-AGAATGAACC-CTGACCAAATGGATATACTA 8446 ||| |||||| | |||| || |||| |||| ||| ||| | | || || | | Sbjct 37510 AGAACAATACCATAAAGCATACCGTCAGCAGAAACTACCATTGATCCGAAGGGTA-AATT 37452 Query 8447 AGAACACTGCGAAAGCAGCAG-ATACTGGAGCACTATATGCTAC-ACAGATCCATGGTCT 8504 |||| || || | ||| || | |||| || || ||||||| | | || || || | Sbjct 37451 AGAATACCGC-AGAGCTGCTGTCTACTTGA-CAGAGAATGCTACGAAACAT-CAAGGACG 37395 Query 8505 CATACCTAA--GCGGTATGATAA--CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAA 8560 ||||||||| | ||| | ||| ||||| | | |||||| || |||| |||| Sbjct 37394 CATACCTAAACACCGTA-GCTAAGTTTCCCATTCACGACCCATCCAACAAGAAGCACCAA 37336 Query 8561 TAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT-ATACAACCACTC-ATCTAA 8618 | | ||| ||||| | | || || || || || || || || ||||| || || | Sbjct 37335 TTAAGAAATGGAATACGATTAATTGGTAAGG-CCACCATTGGTATAACCATTCTTTCAAC 37277 Query 8619 TGTGGCAG---CTTCCCAAATG 8637 || |||| ||||||||||| Sbjct 37276 TGAAGCAGCCCCTTCCCAAATG 37255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615759805022440