Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq5060 129 2e-25 >seq5060 Length=6176 Score = 129 bits (142), Expect = 2e-25 Identities = 241/349 (69%), Gaps = 35/349 (10%) Strand=Plus/Plus Query 39885 CCCCTGAGAACTGGGCCGCCTGAAGCTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGA- 39942 |||| || |||||| ||| |||||| || |||||| ||| |||| ||||||| | Sbjct 1439 CCCCGGA-AACTGGACCGTCTGAAGTGAGAATTTTCCCGTAATGTTT---TGGCTGGCAT 1494 Query 39943 -GAGGAGCGGAATCGCATGAAGGCATCGAAGTTCACAGAGGCGCAGAAGGCGTTCATCCT 40001 || ||| | | || |||||| |||| || | ||| ||||| ||||||||||| Sbjct 1495 TGACGAGGGAAGACG-ATGAAGAAGTCGAGATTTTCGGAGCAGCAGATAGCGTTCATCCT 1553 Query 40002 GAAGCAGGGCGAGGAAGGCACGCCGGTCGCAAAGATCTGCCGCAAGGCCGGGAT----CA 40057 ||||||||| || || |||||| |||| | || ||||||||||||| ||||| || Sbjct 1554 GAAGCAGGGAGATGACGGCACGAGCGTCGAAGAGGTCTGCCGCAAGGCAGGGATATCGCA 1613 Query 40058 GCTAGGCGGCCTACTT------CAA---------CTGGAAGAAGC-------GATATGGC 40095 || || || ||| ||| | || || || | | ||| Sbjct 1614 GC-AGACGTATTACCGGTGGCGCAAGAAGTATGCCGGGCTGATGCCGTCGGAGGTCAGGC 1672 Query 40096 GGCTAAAGCAGCTTGAGGACGAGAATGCCCGACTGAAGAAGATCGTGGCCGACCTGACGC 40155 | || |||||||| ||||| || ||||| || |||||| ||| ||||| |||||| | | Sbjct 1673 GACTGAAGCAGCTCGAGGAAGAAAATGCACGTCTGAAGCGGATGGTGGCAGACCTGTCTC 1732 Query 40156 TCGACCGCGAGATGTTGAAGGACGTCATCCGCCGAAAACTCTGAGGCCT 40204 | ||| || ||| || |||| || ||||||||||| ||||||||||| Sbjct 1733 TGGACAAGGACATGCTGCAGGATGTTATCCGCCGAAAGCTCTGAGGCCT 1781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128597245219782