Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2386 122 2e-23 >seq2386 Length=46605 Score = 122 bits (134), Expect = 2e-23 Identities = 477/700 (68%), Gaps = 54/700 (8%) Strand=Plus/Plus Query 42550 GAATGGCTCTAC-AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 |||||| | ||| ||||| || ||||| || | |||| ||||| ||| | || ||| Sbjct 37284 GAATGGTTATACCAATGGTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTG- 37341 Query 42609 CTTCTC-TTACTTGGGACGCGAATGGGAACTTTCG-TACCGACTT--GGGATGAGGCCCT 42664 ||||| || |||| || ||||||||| || | ||| | || || ||| | || | Sbjct 37342 CTTCTTGTTGGATGGGTCGTGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTT 37401 Query 42665 GGATCTTT-GTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTAT 42723 | || ||| || || | ||||| | | | ||||| |||| || ||| | | || Sbjct 37402 G-ATGTTTCGTAGCATTCTCTGTCAAGTAGACAGCAGCT-CTGCGGTATTC-TAATTTAC 37458 Query 42724 CCATTTGGGCAA-GGTTCTTTTT-CAGATGGAATGCCTCTTGGCATT--TCCGGTA-CGT 42778 || | | ||| ||| ||| | | || || |||| | ||| ||| || |||| | | Sbjct 37459 CCTTCGGATCAATGGTAGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCAT 37518 Query 42779 TCAACTTCATGTT-GGTCTTCCAG--GCT-GAACATAACATTCTTATGCATCCT---TTC 42831 | ||||||||| | ||| ||||| ||| ||||||||| || | ||||| ||| ||| Sbjct 37519 TTAACTTCATGATCGGTTTTCCAAAAGCTCGAACATAACTTT-TAATGCA-CCTGGATTC 37576 Query 42832 CATA-TGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTAT-GCATGGTA 42889 |||| || ||||||||| || ||| |||| | | || ||||| ||||||| Sbjct 37577 CATAATGGCTGGTGTTGCTGGATGTTTTCGTGGTTATTATATCAGTGCTATCGCATGGTT 37636 Query 42890 GT-CTTGTCACCTCTTCTCTTGTGCGTGAAACGAC-TGAAAACGAAAGCCAAAATTATGG 42947 | || || | || | | | |||||||||| |||| ||| ||| | || Sbjct 37637 CTTCTAGTAAT-TCAAGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAAT-ACGG 37694 Query 42948 CTACAAG-TTCGGTCA-AGAG-GAGGAGACTTATAACATTGTTGCAGCGCAT-GGTTACT 43003 ||||| ||||| || ||| || || ||||| |||||||| || || ||| ||||||| Sbjct 37695 TTACAAAATTCGGACAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACT 37754 Query 43004 TTGGACGGCTT--ATCTTCC--AATATGCG-TCGTTTAATAATAGTCGCT-----CTTTG 43053 |||| | || ||||| | | || | | ||||| || || | || |||| Sbjct 37755 TTGGGTGCGTTTAATCTTGCGCAGTAGCAGCTAGTTTAC-AACAGACTCTAGAGGCTTTA 37813 Query 43054 CACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGT 43113 || ||||| ||||| || ||||| | || ||||||||||| || || | || || || Sbjct 37814 CATTTCTTCCTTGC-GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTGT-TGT 37871 Query 43114 ACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA- 43172 |||||||| |||||||| ||||| |||| ||||||||| || |||| |||| | |||| Sbjct 37872 ACTATGGCATTTAACTTAAATGG-TTTAGCTTTAACCAGTCTGTTGTAGATAGT-AGAAG 37929 Query 43173 -TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGC 43211 || ||| | | || |||||||| || | || ||||| Sbjct 37930 GTCGTGTATTAACGACATGGGCTGACATAT--AACCGTGC 37967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143510084768196