Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2386 134 4e-27 >seq2386 Length=46605 Score = 134 bits (148), Expect = 4e-27 Identities = 384/548 (70%), Gaps = 47/548 (9%) Strand=Plus/Minus Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| ||| ||||||||||| | || || || | || |||||| || || Sbjct 37967 GCACGGTT--ATATGTCAGCCCATGTCGTTAATACACGACCTTCTACTATCTACAACAGA 37910 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 |||||||||| |||| ||||||| |||||||||||| || || | ||| | || ||| | Sbjct 37909 CTGGTTAAAGCTAAA-CCATTTAAGTTAAATGCCATAGTACA-ACACCTAAAGCTGTTAA 37852 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAG-----AACGGCTGTTA 26110 ||| || ||||| | ||||| | ||||| |||||||| | || | | ||||| Sbjct 37851 CCAAATCCCAACTTCAGGCCATG-CGCAAGGAAGAAATGTAAAGCCTCTAGAGTCTGTTG 37793 Query 26111 TTAAAACTCGC--ATACT--GAAAAATTAA--TCTCCCAAAGT-ACCCGTGTGCAGCGAC 26163 | ||||| || |||| | || ||||| | |||||||| ||| |||||||| || Sbjct 37792 T--AAACTAGCTGCTACTGCGCAAGATTAAACGCACCCAAAGTAACCTATGTGCAGCTAC 37735 Query 26164 AATATTATATGTCTCTTC-ATCT-TG-CCCAAACTTATAGCCATAAT-TCTG-TGAGACT 26218 ||| || || || ||||| |||| || || || || || || || | | | | ||| Sbjct 37734 AATGTTGTAAGTTTCTTCTATCTCTGTCCGAATTTTGTAACCGTATTAACAGATTCAACT 37675 Query 26219 TCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGC-ATAGCAGCGAA 26277 | | || ||||||| || | ||| || || || ||| |||||| || Sbjct 37674 T-CACT-TCGTTTCACGTATTAAACTTGAATTACTAGAAGAACCATGCGATAGCACTGAT 37617 Query 26278 AAGAGCTCCACCGAAAAC-CCCAGCAACACCAGCCA-TATGGAAT--GGGTGCATGAGTA 26333 | | ||| ||||||| |||||||||||||||| |||||||| ||||||| | | Sbjct 37616 ATAATAACCA-CGAAAACATCCAGCAACACCAGCCATTATGGAATCCAGGTGCATTA-AA 37559 Query 26334 TATTATGTTC-TGC--TTGGAATA-CGAACATAAAGTTAAAAG-TACCAGA--GATACCA 26386 |||||||| || |||||| | ||| ||| |||||||| | ||||||| |||||| Sbjct 37558 AGTTATGTTCGAGCTTTTGGAAAACCGATCATGAAGTTAAATGCTACCAGAACAATACCA 37499 Query 26387 AGAGGCATTCCATCA-CTAAAACT-CCCTTG-TCCGAAAGGATAAACTAAGAACACTGCG 26443 | |||| || ||| | ||||| || ||| |||| |||| |||| | |||| || || Sbjct 37498 TAAAGCATACCGTCAGCAGAAACTACCATTGATCCG-AAGGGTAAA-TTAGAATACCGC- 37442 Query 26444 AGAGCTGC 26451 |||||||| Sbjct 37441 AGAGCTGC 37434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147688623375840