Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2386 158 1e-33 >seq2386 Length=46605 Score = 158 bits (174), Expect = 1e-33 Identities = 549/796 (69%), Gaps = 82/796 (10%) Strand=Plus/Plus Query 155169 CCCTAGT-TCAAACGCAA--TTGGTCT--CCACTTCTAT---CCTATTTGGGAAGCAGCA 155220 ||||||| ||||| |||| ||||| | ||| ||||| | |||||||||| || Sbjct 37212 CCCTAGTATCAAA-GCAAGTTTGGTATTCCCATTTCTACGGCCACATTTGGGAAGGGGCT 37270 Query 155221 ACTC---TTGAT-GAGTGGTTGTAC-AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 || |||| || ||||| ||| |||||||| |||| |||| | | || ||||| | Sbjct 37271 GCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAATTAATCGTATTCCATT 37329 Query 155276 TCCTTATCGGAATCACAGCATACTGT------GGTCGTCAGTGGGAA-CTTTCTTACCGT 155328 || | || || || | ||| |||||| | |||||| ||| ||| || Sbjct 37330 TCTTAATTGGT------GCTTCTTGTTGGATGGGTCGTGAATGGGAAACTTAGCTACGGT 37383 Query 155329 CTT--GGCATGCGTCCTTGGATCTGT-GTTGCATACTCTGCACCAGTAT-CTGCTGCGTT 155384 || || ||||||||||| || | | || |||| ||||| | |||| | || || | Sbjct 37384 GTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATTCTCTGT-CAAGTAGACAGCAGCTCT 37441 Query 155385 CGCTGTATTCCTTGTTTATCCTTTCGGTCAA-GGTTCTTTCT-CTGATGCGATGCCTCTT 155442 || |||||| | |||| |||| | |||| ||| ||||| |||| | |||| | | Sbjct 37442 -GCGGTATTC-TAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGACGGTATGCTTTAT 37499 Query 155443 GGTATC--TCTGGTA-CTTTTAACTATATGTTCG-TGTTCCAA--GCA-GAACACAATAT 155495 ||||| ||||||| | ||||||| ||| ||| | |||||| || ||||| || | Sbjct 37500 GGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCGAACATAACTT 37559 Query 155496 CCTTATGCACCCC--TTCCACA-TGCTTGGAGTAGCAGG-TGTGTTCGGTGGATCTCTTT 155551 | ||||||| ||||| | || ||| || || || ||| |||| ||| | | | Sbjct 37560 T-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTCG-TGGTTATTATA 37617 Query 155552 TCTCTGCTAT-GCACGGTTCAT-TGGTGA--CATCTTCACTAATCCGTGAAACTAC-TGA 155606 || |||||| ||| ||||| | | || | || || |||| |||||||| | ||| Sbjct 37618 TCAGTGCTATCGCATGGTTCTTCTAGTAATTCAAGTT---TAATACGTGAAACGAAGTGA 37674 Query 155607 GCAAGAGTCTCAGAACTATGGTTACAAG-TTCGGACA-AGA-AGAAGAAACTTATAACAT 155663 || ||| || || |||||||| |||||||| ||| |||||||||||| ||||| Sbjct 37675 AGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAACTTACAACAT 37733 Query 155664 TGTTGCTGCTCAT-GGATACTTCGG--TCGTCTTATCTT--CCAGTATGCATC----CTT 155714 ||| ||||| ||| || ||||| || ||| | ||||| ||||| ||| | | Sbjct 37734 TGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA-GCAGCTAGTTTA 37792 Query 155715 CAACA-ACTCAAGAAG-TCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||| |||| ||| | | | || ||||||||||| |||||||||| || | || ||| Sbjct 37793 CAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGTTGGGATTTGG 37851 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 ||| ||| | ||||| | || |||||||| ||| | || ||||| | ||| |||||| Sbjct 37852 TTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT-AGCTTTAACCAG 37909 Query 155833 TCTGTAGTAGACGCTAG-TGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891 ||||| ||||| ||| ||| || | | |||||||| ||||| |||||| || Sbjct 37910 TCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGACAT--ATAACCGTGC 37967 Query 155892 TGGTCT-TGGTATGGA 155906 | | | |||||||| Sbjct 37968 AGATTTAAGGTATGGA 37983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584737773766120