Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2386 154 2e-32 >seq2386 Length=46605 Score = 154 bits (170), Expect = 2e-32 Identities = 494/712 (69%), Gaps = 52/712 (7%) Strand=Plus/Plus Query 157816 CATCTGGGAAG---CCGCATCACTTGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAA 157870 ||| ||||||| | || ||| |||| || ||| | || || ||||| |||| |||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 157871 CTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA-CT 157929 | | ||||| || ||| | |||||| | | | ||||| ||||| |||||| || Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCGTGAATGGGAAACT 37373 Query 157930 TTCATACCGT--TTAGGTATGCGCCCCTGGATCTGT-GTAGCATATTCTGCTCCAGTCG- 157985 | ||| || ||||||||||| ||| ||| | | ||||||| |||| || ||| | Sbjct 37374 TAGCTACGGTGTTTAGGTATGCG-TCCTTGATGTTTCGTAGCATTCTCTG-TCAAGTAGA 37431 Query 157986 CTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA-GGTTCTTTCT-CCGATGC 158043 | ||||| ||||| ||||| || | || |||| | |||| ||| ||||| | || | Sbjct 37432 CAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGACGG 37489 Query 158044 TATGCCTCTTGGTAT--CTCTGGTA-CTTTTAACTACATGCT-TGTATTCC--AAGC-AG 158096 ||||| | |||||| ||||||| | ||||||| |||| | || |||| |||| | Sbjct 37490 TATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCG 37549 Query 158097 AACACAACATCCTTATGCACCCG--TTCCAT-ATGCTCGGTGTTGCTGG-GGTATTCGGT 158152 |||| ||| | | ||||||| | |||||| ||| ||||||||||| || ||| || Sbjct 37550 AACATAAC-TTTTAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTC-GT 37607 Query 158153 GGATCTCTTTTCTCTGCTAT-GCACGG-AAGTCTCGTTACTTCCTCACTCGTTCGTGAAA 158210 || | | | || |||||| ||| || ||| | || ||| | | ||||||| Sbjct 37608 GGTTATTATATCAGTGCTATCGCATGGTTCTTCTAG-TAATTCAAGTTTAATACGTGAAA 37666 Query 158211 CG-ACTGAAACAGAGTCACAGAACTACGGTTAC-AAGTTCGGTCA-AGA-GGAAGAGACC 158266 || | |||| || || || ||||||||| || ||||| || ||| ||||| || Sbjct 37667 CGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAACT 37725 Query 158267 TATAACATCGTCGCAGCACAT-GGCTACTTCGG--TCGTTTGATCTT--CCAATA--CGC 158319 || ||||| || || |||||| || ||||| || ||||| ||||| || || || Sbjct 37726 TACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTAGCAGC 37785 Query 158320 TTCATT-CAACA-ACTCCCG-TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 158376 | || ||||| |||| | | || || ||||||||||| |||||||||| || || Sbjct 37786 TAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGTTGG 37844 Query 158377 CATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTT 158436 || ||||| || || | || || | || |||||||| ||| | || ||||| | ||| Sbjct 37845 GATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT-AGCTT 37902 Query 158437 CAACCAGTCCATCCTTGATGGT-CAGGGTCGTGTGTTGAACACCTGGGCAGA 158487 |||||||| | | ||| || | |||||||| || | || ||||| || Sbjct 37903 TAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGA 37954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548283047679640