Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4750 96.9 4e-15 seq4604 86.0 7e-12 seq12461 84.2 2e-11 >seq4750 Length=7679 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 9830 |||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 5230 TGGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 5289 Query 9831 GTCCGCTATTCTCCA 9845 |||| ||||||||| Sbjct 5290 CTCCGATATTCTCCA 5304 >seq4604 Length=8381 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 4064 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 4123 Query 9832 TCCGCTATTCTCCA 9845 |||| ||| ||||| Sbjct 4124 TCCGATATCCTCCA 4137 >seq12461 Length=549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 ||||| |||||| ||| ||||||||| || ||||||||||| || ||||| |||||| || Sbjct 86 CGGGGCGTAGCTCAGCCTGGTAGAGCACCTGCTTTGGGAGCAGGGGGTCGTAGGTTCGAA 27 Query 148191 TCCTGCCACCCCGA 148204 |||||| |||||| Sbjct 26 TCCTGCTGCCCCGA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549530839778440