Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2386 95.1 1e-14 >seq2386 Length=46605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 486/717 (68%), Gaps = 56/717 (8%) Strand=Plus/Plus Query 157284 CCCCATCTGGGAAG---CAGCATCACTTGAT-GAGTGGCTTTAC-AACGGTGGTCCTTTC 157338 || ||| ||||||| | || ||| |||| || ||| | ||| || ||||| |||| | Sbjct 37252 CCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTAC 37310 Query 157339 CAACTGGTAGTCTTTCACTTCCTGATCGG--CATCTATGCCTATATGGGACGTGAGTGGG 157396 ||| | | || || || ||| | || || | ||| || | ||||| ||||| |||| Sbjct 37311 CAATTAATCGTATTCCATTTCTTAATTGGTGCTTCT-TGT-TGGATGGGTCGTGAATGGG 37368 Query 157397 AA-CTTTCTTACCGT--TTAGGTATGCGCCCCTGGATCTGT-GTTGCCTACTCGGCACCA 157452 || ||| ||| || ||||||||||| || || || | | || || | ||| | | | Sbjct 37369 AAACTTAGCTACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATTCTCTGT-CAA 37426 Query 157453 GTCG-CTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA-GGTTCTTTCTCC- 157509 || | | || || ||| |||||| | | || |||| | |||| ||| ||||| | Sbjct 37427 GTAGACAGCAGCTC-TGCGGTATTC-TAATTTACCCTTCGGATCAATGGTAGTTTCTGCT 37484 Query 157510 GATGCTATGCCTCTTGGTATC--TCTGGTA-CTTTTAACTATATGCTCG-TCTTCCAG-- 157563 || | ||||| | |||||| ||||||| | ||||||| ||| ||| | ||||| Sbjct 37485 GACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAA 37544 Query 157564 GCA-GAGCACAATATTCTTATGCATCCG--TTCCACA-TGCTCGGCGTTGCTGGG-GTAT 157618 || || || || || | ||||| | | ||||| | || || |||||||| || | Sbjct 37545 GCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTT 37603 Query 157619 TCGGTGGATCTTTGTTCTCTGCTAT-GCACGGAAGT-CTCGTTACTTCCTCGCTTGTTCG 157676 ||| ||| | || || |||||| ||| || | || || | ||| | | || Sbjct 37604 TCG-TGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA-TTCAAGTTTAATACG 37661 Query 157677 TGAAAC-AACTGAAACAGAGTCACAGAACTATGGTTACAAG-TTCGGTCA-AGA-AGAAG 157732 |||||| || |||| || || || || |||||||| ||||| || ||| ||||| Sbjct 37662 TGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAG 37720 Query 157733 AGACGTACAACATCGTTGCTGCACAC-GGTTACTTCGGTCGCCTG--ATCTTCC--AATA 157787 | || |||||||| || |||||||| |||||||| || || | ||||| | | || Sbjct 37721 AAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA 37780 Query 157788 C--GCTTCATT-CAACA-ACAGCAGAAGTCTT-CACTTCTTCCTCGCCGCATGGCCTGTT 157842 ||| || ||||| || ||| | || || |||||||| || |||||||||| Sbjct 37781 GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAA 37839 Query 157843 GTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTC 157902 || || || ||||| || || | || || | || |||||||| ||| | || ||||| Sbjct 37840 GTTGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT- 37897 Query 157903 AACTTCAACCAGTCCATCCTTGATGGT-CAGGGTCGTGTGTTGAACACCTGGGCAGA 157958 | ||| |||||||| | | ||| || | |||||||| || | || ||||| || Sbjct 37898 AGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGA 37954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545182764234160