Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2386 136 5e-27 seq444 95.1 1e-14 >seq2386 Length=46605 Score = 136 bits (150), Expect = 5e-27 Identities = 495/716 (69%), Gaps = 58/716 (8%) Strand=Plus/Plus Query 177794 CATCTGGGAAG---CCGCATCACTTGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAA 177848 ||| ||||||| | || ||| |||| || ||| | || || ||||| |||| |||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 177849 CTCGTAGTCTTTCACTTCCTTATCGG--CATCTATGCATATATGGGACGTGAGTGGGAA- 177905 | | || || || ||| | || || | ||| || | ||||| ||||| |||||| Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTGCTTCT-TGT-TGGATGGGTCGTGAATGGGAAA 37371 Query 177906 CTTTCATACCGTCT--AGGTATGCGCCCCTGGATCTGT-GTTGCATACTCTGCACCTGTT 177962 ||| ||| || | ||||||||| || || || | | || |||| ||||| | || Sbjct 37372 CTTAGCTACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATTCTCTGT-CAAGTA 37429 Query 177963 G-CAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAA-GGTTCATTCTCC-GAT 178019 | ||||||| || || || || ||| | || |||| | |||| ||| |||| | || Sbjct 37430 GACAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGAC 37487 Query 178020 GCTATGCCTCTTGGTATC--TCTGGTA-CTTTTAACTACATGCTTG-TATTCCAA--GCA 178073 | ||||| | |||||| ||||||| | ||||||| |||| | | | |||||| || Sbjct 37488 GGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCT 37547 Query 178074 -GAACACAATATCCTTATGCACCCG--TTCCACA-TGCTCGGTGTTGCTGGG-GTATTCG 178128 ||||| || | | ||||||| | ||||| | || ||||||||||| || |||| Sbjct 37548 CGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTCG 37606 Query 178129 GTGGATCTCTTTTCTCTGCTAT-GCATGGAAGT-CTCGTTACTTCTTCGCTCGTCCGTGA 178186 ||| | | | || |||||| |||||| | || || | ||| | | ||||| Sbjct 37607 -TGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA-TTCAAGTTTAATACGTGA 37664 Query 178187 GACGACA-GAAACTGAGTCCCAGAACTATGGTTACAAG-TTCGGACA-AGA-AGAAGAAA 178242 |||| ||| ||| || || || |||||||| |||||||| ||| |||||||| Sbjct 37665 AACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAA 37723 Query 178243 CATATAACATCGTCGCAGCCCAT-GGTTACTTCGGT--CGTTTGATCTTCC--AATATGC 178297 | || ||||| || || || ||| |||||||| || ||||| ||||| | | || || Sbjct 37724 CTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA-GC 37782 Query 178298 ATC--GTT--CAACA-ACTCCCGTT-CACTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 178351 | | ||| ||||| |||| | | | || |||||||| || |||||||||| ||| Sbjct 37783 AGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGT 37841 Query 178352 TGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAA 178411 ||| || ||||| || || | ||||| | || |||||||||||| | ||||| || | Sbjct 37842 TGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGG-TTTAG 37899 Query 178412 CTTCAACCAGTCCATCCTCGA-CGGACAAGGACGTGTCCTCAACACATGGGCAGAC 178466 ||| |||||||| | | || | | |||| ||||| | | |||||||| ||| Sbjct 37900 CTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGAC 37955 >seq444 Length=311324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 155272 GTGTAGTTCAGTGGTAGAACGTTAGCCTTCCAAGCTAAATGTCGTCGGTTCAAGTCCGAT 155331 |||||||||||||||||||||| ||| | ||||||| |||||||||||||| | |||||| Sbjct 3932 GTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTCGGTTCGACTCCGAT 3873 Query 155332 CTCTCGCTCTTT 155343 | | |||||||| Sbjct 3872 CACCCGCTCTTT 3861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605566303415320