Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3163 127 2e-23 >seq3163 Length=20664 Score = 127 bits (140), Expect = 2e-23 Identities = 262/375 (70%), Gaps = 15/375 (4%) Strand=Plus/Minus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||||||||| || ||||| || || | |||| || |||| | |||||| |||| Sbjct 19575 ATTATCAAAGTCATCACCACCTAAGTGTGTATCACCATCGGTAGATTTTACTTCAAAAAC 19516 Query 282250 TCCATCTTCAAGAGACAAA-AGAGTAACATCATGGGTT-CCACCACCCATATCAAAAATA 282307 ||||| | | | ||| | || ||| ||||| ||| |||||||| ||||| | Sbjct 19515 ACCATCGCCCA-ACTCAAGTACAGAAACGTCATGTGTTTCCACCACCACAGTCAAACACT 19457 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | | ||||||||||||||||| ||| || || || || || | ||||| ||||| Sbjct 19456 ACGATTTTCATTTCTTTGTCTTG---TTTGTCTAGTCCGTAGGCTAGGGCAGC-GCAGTA 19401 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || ||||| | ||| | | | |||||||| ||||| |||||||| ||| Sbjct 19400 GGCTCGTTTATAATACGTTTAACCTCTA-AACAGCAATTTCACCTGCTTCTTTAGTAGCT 19342 Query 282428 TGTCTTTGT-GAATCGTTAAAATATGCAGGAAC-AGTAATAACGGCATCTGTTACTTCTT 282485 || | |||| | ||||||||| |||||||| || ||||| || || ||| | || |||| Sbjct 19341 TG-CGTTGTGGCATCGTTAAAGTATGCAGGTACTTGTAATTACTGCTTCTTTAACCTCTT 19283 Query 282486 TTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTT 282542 || | | || ||| || |||| |||||||| | || | ||||| ||||||| Sbjct 19282 GCCCTA-AGAAATCCTTCAGCAGTTTTCTTCATTTTTTTGAAGCACCATTGCCGAAATTT 19224 Query 282543 GTTCTGGAGAATATT 282557 || ||| | ||||| Sbjct 19223 CTTGTGGTGTATATT 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739976100619902