Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2386 174 5e-39 >seq2386 Length=46605 Score = 174 bits (192), Expect = 5e-39 Identities = 511/734 (70%), Gaps = 65/734 (9%) Strand=Plus/Plus Query 19730 CACTTCTAC--CCA-ATTTGGGAAG---CTAGTTCACTTGAT-GAATGGCTCTACAACGG 19782 || |||||| ||| |||||||||| || |||| |||| |||||| | ||| | | Sbjct 37241 CATTTCTACGGCCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATG 37300 Query 19783 GGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG--CATCTATGCTTACATGGGA 19840 | | || | |||| | | || ||||| ||| | ||||| | ||| || || ||||| Sbjct 37301 GTGGCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCT-TG-TTGGATGGGT 37358 Query 19841 CGAGAGTGGGAA-CTTAGCTATCGACT--AGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897 || || |||||| |||||||| | | ||| ||| | ||||| || || || | | Sbjct 37359 CGTGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTTGATGTTTCGTAGCATTC 37418 Query 19898 TCTGCTCCGGTTG-CAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAG-GGTA 19955 |||| || || | |||| || |||||||| || || | ||||| | | ||| |||| Sbjct 37419 TCTG-TCAAGTAGACAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTA 37475 Query 19956 GCTTCTCC-GATGCTATGCCTTTGGGTATC--TCGGGTA-CGTTCAACTACATGTT-GGT 20010 | |||| | || | ||||| || ||||| || |||| | || |||| |||| | ||| Sbjct 37476 GTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGT 37535 Query 20011 ATTCCAA--GC-CGAACATAACATTCTCATGCACCCG--TTCCACA-TGCTTGGTGTGGC 20064 |||||| || |||||||||| || | ||||||| | ||||| | || |||||| || Sbjct 37536 TTTCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGC 37594 Query 20065 TGG-TGTATTCGGTGGGTCACTAT-TCAGTGCGAT-GCACGGTTCG-CTTGTTACGTCCT 20120 ||| ||| |||| ||| | ||| ||||||| || ||| ||||| || || | | | Sbjct 37595 TGGATGTTTTCGT--GGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA--TTCA 37650 Query 20121 CGCTTG-TGCGTGAGACTAC-TGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCA 20178 | || | ||||| || | |||| ||| | || || |||||||| || || Sbjct 37651 AGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGAC 37709 Query 20179 AGA---AGAAGAGACCTATAACATCGTAGCCGCTCAT-GGTTACTTTGGA--CGTTTGAT 20232 ||| |||||| || || ||||| ||||| || ||| ||||||||||| ||||| || Sbjct 37710 AGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAAT 37769 Query 20233 CTTCC--AATAC--GCTTCTTTCAACAATAGCCGTT-----CTCTACACTTCTTCCTTGC 20283 ||| | | || ||| ||| |||| || | | || |||| ||||||||||| Sbjct 37770 CTTGCGCAGTAGCAGCTAGTTT--ACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC 37827 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 || ||||| | || ||||||||||| | || || || | || ||| ||||| ||||| Sbjct 37828 -GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTG-TTGTACTATGGCATTTAA 37885 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACA-ATGGTCGTGTCATTGA-T 20401 | || ||||| | |||||||||||| || | || | | | |||||||| ||| | Sbjct 37886 CTTAAATGGTTT-AGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGT-ATTAACG 37943 Query 20402 ACTTGGGCTGACAT 20415 || ||||||||||| Sbjct 37944 ACATGGGCTGACAT 37957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148805246633166