Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2386 161 3e-35 >seq2386 Length=46605 Score = 161 bits (178), Expect = 3e-35 Identities = 508/730 (70%), Gaps = 63/730 (9%) Strand=Plus/Plus Query 28858 CACTTCTAC--CCA-ATTTGGGAAG---CTAATTCACTTGAT-GAATGGCTCTACAACGG 28910 || |||||| ||| |||||||||| || |||| |||| |||||| | ||| | | Sbjct 37241 CATTTCTACGGCCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATG 37300 Query 28911 GGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACG 28970 | | || | |||| | | || ||||| ||| | ||||| | | | || ||||| || Sbjct 37301 GTGGCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCG 37360 Query 28971 CGAGTGGGAA-CTTAGCTATCGACT--AGGAATGAGGCCGTGGATTTGTGTCGCATACTC 29027 || |||||| |||||||| | | ||| ||| | || || || || |||| ||| Sbjct 37361 TGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTTGATGTTTCGTAGCATTCTC 37420 Query 29028 AGCTCCCGTCG-CAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGG-TCAA-GGTTC 29084 | || || | |||| || |||||||| ||| | | ||||| ||||| |||| ||| Sbjct 37421 TG-TCAAGTAGACAGCAGC-TCTGCGGTATTC-TAATTTACCC-TTCGGATCAATGGTAG 37476 Query 29085 TTTTAGC-GACGCGATGCCTTTGGGTATT--TCAGGCACC-TTCAACTACATGCT-GGTG 29139 ||| || |||| |||| || |||||| || || | | || |||| |||| | ||| Sbjct 37477 TTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTT 37536 Query 29140 TTCCAA--GC-CGAACATAACATTCTCATGCACCCG--TTCCACA-TGCTGGGCGTTGCT 29193 |||||| || |||||||||| || | ||||||| | ||||| | || || |||||| Sbjct 37537 TTCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCT 37595 Query 29194 GGA-GTGTTCGGTGGCTCGCTATTT-AGTGCAAT-GCACGGTTCG-CTTGTCACGTCCTC 29249 ||| || |||| ||| | ||| | ||||| || ||| ||||| || || | | | Sbjct 37596 GGATGTTTTCG-TGGTTAT-TATATCAGTGCTATCGCATGGTTCTTCTAGTAA--TTCAA 37651 Query 29250 GCTTG-TGCGTGAGACGAC-TGAAGACATCTCTCAGAACTATGGTTACAAGTTT-GGACA 29306 | || | ||||| |||| ||||| ||| || || |||||||| || ||||| Sbjct 37652 GTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACA 37710 Query 29307 -AGA-AGAAGAGACTTATAACATCGTAGCCGCTCAC-GGTTACTTTGGA--CGTTTGATC 29361 ||| |||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 37711 GAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATC 37770 Query 29362 TTCC--AATAT--GCTTCTTTCAATAATAGCCGTT-----CTCTACACTTCTTCCTTGCT 29412 || | | || ||| ||| | || || | | || |||| ||||||||||| Sbjct 37771 TTGCGCAGTAGCAGCTAGTTT--ACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC- 37827 Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 29472 || ||||| | || ||||||||||| | || || || | || ||| ||||| ||||| Sbjct 37828 GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTG-TTGTACTATGGCATTTAA- 37885 Query 29473 CTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACA-ATGGTCGTGTCATTAA-TA 29530 || || | |||| |||||||||||| || | || | | | |||||||| ||||| | Sbjct 37886 CTTAAATGGTTTAGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGT-ATTAACGA 37944 Query 29531 CTTGGGCTGA 29540 | |||||||| Sbjct 37945 CATGGGCTGA 37954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146642388977142