Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2386 141 3e-29 >seq2386 Length=46605 Score = 141 bits (156), Expect = 3e-29 Identities = 499/731 (68%), Gaps = 59/731 (8%) Strand=Plus/Plus Query 18949 CACTTCTAC--CCA-ATTTGGGAAG---CTAATTCACTTGAT-GAATGGCTCTACAACGG 19001 || |||||| ||| |||||||||| || |||| |||| |||||| | ||| | | Sbjct 37241 CATTTCTACGGCCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATG 37300 Query 19002 GGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACG 19061 | | || | |||| | | || ||||| ||| | ||||| | | | || ||||| || Sbjct 37301 GTGGCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCG 37360 Query 19062 CGAGTGGGAA-CTTAGCTATCGACT--AGGGATGCGCCCTTGGATTTGTGTTGCCTACTC 19118 || |||||| |||||||| | | ||| ||||| ||||| || || || | ||| Sbjct 37361 TGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTTGATGTTTCGTAGCATTCTC 37420 Query 19119 AGCTCCTGTTGCC-GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCT 19177 | || || | | ||||| |||||||| ||| | | || || | | |||| | | | Sbjct 37421 TG-TCAAGTAGACAGCAGC-TCTGCGGTATTC-TAATTTACCCTTCGGATCAATGGTAGT 37477 Query 19178 TTA-GC-GACGCTATGCCTTTGGGTATTAGT--GGTA-CGTTCAACTACATGCTTG-TAT 19231 || || |||| ||||| || |||||| | |||| | || |||| |||| | | | | Sbjct 37478 TTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTT 37537 Query 19232 TCCAG--GCT-GAACATAACATCCTCATGCACCCG--TTCCACA-TGCTCGGTGTCGCTG 19285 |||| ||| ||||||||| | | ||||||| | ||||| | || ||||| |||| Sbjct 37538 TCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCTG 37596 Query 19286 G-TGTGTTCGGCGGGTCACTATTT-AGTGCGAT-GCACGGTTCG-CTTGTTACGTCCTCG 19341 | ||| |||| ||| | ||| | ||||| || ||| ||||| || || | | | | Sbjct 37597 GATGTTTTCGT--GGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA--TTCAAG 37652 Query 19342 CTTG-TGCGTGAAACTAC-TGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAG 19399 || | |||||||| | ||||| | |||| || || || ||||| || || || Sbjct 37653 TTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAG 37711 Query 19400 A---AGAAGAGACTTATAACATTGTTGCTGCTCATGGGTA--TTTTGGTCGGCTTATTTT 19454 | |||||| ||||| |||||||| ||||| ||| ||| ||| ||| | ||| | | Sbjct 37712 AGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCT 37771 Query 19455 C---CAGTACGCATCCT-TCAACAATAGCCGTT-----CTCTACATTTCTTTTTGGCTGC 19505 ||||| ||| | | |||| || | | || |||||||||| | || || Sbjct 37772 TGCGCAGTA-GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GC 37829 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 ||||||| ||||| |||||||| | || | || || | || |||||||| ||||| Sbjct 37830 ATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTGTT-GTACTATGGCATTTAACTT 37888 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACA-ATGGTCGTGTCATTGA-TACT 19623 ||||| |||| |||||||||||| || | || | | | |||||||| ||| | || Sbjct 37889 AAATGG-TTTAGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGT-ATTAACGACA 37946 Query 19624 TGGGCTGACAT 19634 ||||||||||| Sbjct 37947 TGGGCTGACAT 37957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141126462055566