Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq76 89.7 5e-13 seq3576 87.8 2e-12 seq194 82.4 7e-11 >seq76 Length=624063 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||||||| | ||||| || | | | ||||| || || ||||||||||| || || Sbjct 336060 CGCAAGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTG 336001 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || | ||| || || | | |||| |||||||| || || || || |||||| Sbjct 336000 CGGCCGTCCTCCAACTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCT 335941 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || |||| || | || |||| |||||| || || | Sbjct 335940 TCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATTGTGTCGGACGGCTCGACATCCAGG 335881 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| ||||| || || || || | ||| ||||||||| Sbjct 335880 GTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 335839 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| || || || || || Sbjct 338779 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCC 338720 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| |||||||| || || || || |||||||| || || Sbjct 338719 AACTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 338660 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || |||| || | || |||| |||||| || || | || | ||| ||| Sbjct 338659 ATCTTCTGCTTCACGCCATCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTA 338600 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || | ||| ||||||||| Sbjct 338599 CCCGTGAGGGTCTTGACGAAGATCTGCATG 338570 >seq3576 Length=15149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 146880 AATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATT 146939 || ||||| || ||| ||||| || || || |||| || |||| ||||| || Sbjct 5436 AAGTAAATGCTTATTCACCACACAGAATTCTCCGGCCAAAACTCGTCGATTGTACACGTT 5377 Query 146940 GCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGG 146999 ||| |||||||| |||| |||||||||||| || | ||| || || |||| ||||| || Sbjct 5376 GCTCGTGAAAGGTTCAATAGACTCATTATTCCCAAGTATCTGTGCAGTGGAAGCGGTTGG 5317 Query 147000 CATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAG- 147058 ||| || ||| |||||||| || | ||||| | |||| || || ||| Sbjct 5316 CATAACAGCAGTCAATAATGAATTCCGAATACCGTGTTCTTTCATGTATTC--TCTAAGC 5259 Query 147059 -TTTGCCAGTCCCACATCGA--CGAGGGCGTCACGTTCCACATGTCGTACTGGA 147109 | |||||| || ||| | || || | |||||||||||||| |||||| Sbjct 5258 CCTAGCCAGT--CATATCTATCGGATGGTTTGACGTTCCACATGTCAAACTGGA 5207 >seq194 Length=468613 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || || || ||||| || |||| Sbjct 408296 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 408355 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || |||| Sbjct 408356 AAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 408415 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || | || |||| |||||| || || | || | ||| ||||| || || || || Sbjct 408416 CCGTCGATCGTGTCGGACGGCTCAACGTCAAGGGTGATCGTCTTACCCGTGAGGGTCTTG 408475 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 408476 ACGAAGATCTGCATGCCT 408493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476531802531720