Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq731 156 5e-33 >seq731 Length=224370 Score = 156 bits (172), Expect = 5e-33 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 ||| || ||||||| || ||||||| |||| || |||||||| || ||||||| Sbjct 89587 CACCTGAGCCACCAGCCGCGTCAGCAGCGCGTAGGATGCGATGTTGAACGGCACCCCCAA 89528 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 ||||||||| | | |||||||| ||||||||| ||||| |||| |||||||| || Sbjct 89527 GCCCATGTCGGCGCTTCGCTGGTACATCTGGCACGACAGCTCTCCGTTCGCCACGTAGAA 89468 Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 |||||| | ||||||||||| ||||| ||||| | |||||| ||||||||||| Sbjct 89467 CTGGCAGAACATGTGGCACGGGGGCAGGGCCATCTTGCCGAGGTCCTTCGGGTTCCAGGC 89408 Query 147174 CGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 ||||| ||| | |||||| ||||||||| || Sbjct 89407 CGAGAGCACGATGCGCCTGTCTTCGGGGTTCGTC 89374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 147361 AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTA 147420 |||||||| ||||||| ||||||||||| | ||| || | ||| | || Sbjct 85891 AGAAACTCTCTCGACCCGTTCCCGTCCCAGATGTGGATGCCCCTGTCCTTCAGCACGTTC 85832 Query 147421 GAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACC 147480 | || |||| | ||| || |||||| |||||||||||| ||||| | ||| || || Sbjct 85831 GCGTTCGTGCACCCCGAGACGAACCACAGCAGCTCCTCCGCCACCCCGCGCCAGAAAACG 85772 Query 147481 CTCTTGGTGGTCAGCAGGGGGAACTGGTC---CCTCAGCGAATACCTCGCCTGGTCCCCA 147537 | ||| ||||||| ||| ||||| |||| || ||| ||| | |||| ||||| Sbjct 85771 CGCTTCGTGGTCAACAGCGGGAAGCGGTCCTGCCGCAGGCTGAACCGCATCTGGACCCCA 85712 Query 147538 AACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCGTCCCGTTCTCCAAAATC 147597 ||| || ||||| || || ||||| | ||| | |||||| ||||| |||| || Sbjct 85711 AACTTGGATAGCGTTCCGGTTCCCGTGCGGTCTCCTCTGCGCACGCCGTTGTCCAGGATG 85652 Query 147598 TCC 147600 ||| Sbjct 85651 TCC 85649 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146882 TGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGT 146941 ||||||| || || || |||| | |||||| |||| | || |||||||||| || Sbjct 90015 TGGGGAACGGACGAGGCTTCCGGCGCAGCTGCTCCCTCAGCGCGTCGACGTGGTTGACGT 89956 Query 146942 AGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||||||||||| || | |||||| || || ||||||| ||| |||||| Sbjct 89955 AGACGTGCGCGTCGCCGATGGTGTGGACGAACTCCCCCGCCTTCAGGCCG 89906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583390798192800