Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1316 154 2e-31 seq89 147 3e-29 seq1102 143 4e-28 seq436 143 4e-28 seq64 98.7 1e-14 seq1903 91.5 2e-12 seq5475 89.7 7e-12 seq134 87.8 3e-11 seq85 87.8 3e-11 seq3831 86.0 9e-11 >seq1316 Length=126881 Score = 154 bits (170), Expect = 2e-31 Identities = 183/247 (74%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| || | ||||||||||||||||||||||| |||||| |||| | | Sbjct 95174 TCCTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 95228 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 95229 TC-TCCAAGCGCGGGATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 95287 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||| |||| || | |||| ||||||| ||| || | |||||||| Sbjct 95288 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCCACCCTCTCCTCGCGCGAG 95347 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 | ||||||||||||||||| || | | ||| || ||||||| ||||||||| |||||| Sbjct 95348 GTGCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAG 95407 Query 725136 GGCACCA 725142 ||||||| Sbjct 95408 GGCACCA 95414 Score = 149 bits (164), Expect = 9e-30 Identities = 182/247 (74%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| || | ||||||||||||||||||||||| |||||| |||| | | Sbjct 46630 TCCTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 46576 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 46575 TC-TCCAAGCGCGGGATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 46517 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||| |||| || | |||| ||||||| ||| || | |||||||| Sbjct 46516 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCCACCCTCTCCTCGCGCGAG 46457 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 | ||||||||||||||||| || | | ||| || ||||| | ||||||||| |||||| Sbjct 46456 GTGCAGACCGCCGTGCGCCTCATGCTCCCCGGAGAGCTGGCTAAGCACGCCGTGTCCGAG 46397 Query 725136 GGCACCA 725142 ||||||| Sbjct 46396 GGCACCA 46390 >seq89 Length=595177 Score = 147 bits (162), Expect = 3e-29 Identities = 184/249 (74%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 30610 TCTTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 30664 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 30665 TC-TCCAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 30723 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | |||| |||| ||| | |||| ||||||| || || | || | |||||| Sbjct 30724 GCCGGCGAGTCCGGAAAGCTGACCCGCTACAACAAGAAGGCGACTC--TCTCCTCGCGCG 30781 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||| || |||||||| || | | ||| || ||||||| ||||||||| || | Sbjct 30782 AGGTGCAGACGGCGGTGCGCCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCTG 30841 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 30842 AGGGCACCA 30850 Score = 147 bits (162), Expect = 3e-29 Identities = 184/249 (74%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || |||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 53589 TCTTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 53643 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 53644 TC-TCCAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 53702 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | |||| |||| ||| | |||| ||||||| || || | || | |||||| Sbjct 53703 GCCGGCGAGTCCGGAAAGCTGACCCGCTACAACAAGAAGGCGACTC--TCTCCTCGCGCG 53760 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||| || |||||||| || | | ||| || ||||||| ||||||||| || | Sbjct 53761 AGGTGCAGACGGCGGTGCGCCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCTG 53820 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 53821 AGGGCACCA 53829 >seq1102 Length=154684 Score = 143 bits (158), Expect = 4e-28 Identities = 183/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| || | ||||||||||||||||||||||| |||||| |||| | | Sbjct 7952 TCTTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 7898 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 7897 TC-TCCAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 7839 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | |||| |||| ||| | |||| ||||||| || || | || | |||||| Sbjct 7838 GCCGGCGAGTCCGGAAAGCTGACCCGCTACAACAAGAAGGCGACTC--TCTCCTCGCGCG 7781 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||| || |||||||| || | | ||| || ||||||| ||||||||| || | Sbjct 7780 AGGTGCAGACGGCGGTGCGCCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCTG 7721 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 7720 AGGGCACCA 7712 Score = 143 bits (158), Expect = 4e-28 Identities = 183/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| || | ||||||||||||||||||||||| |||||| |||| | | Sbjct 48481 TCTTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTACACCCCGACACCGGT-----A 48535 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 48536 TC-TCCAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 48594 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | |||| |||| ||| | |||| ||||||| || || | || | |||||| Sbjct 48595 GCCGGCGAGTCCGGAAAGCTGACCCGCTACAACAAGAAGGCGACTC--TCTCCTCGCGCG 48652 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||| || |||||||| || | | ||| || ||||||| ||||||||| || | Sbjct 48653 AGGTGCAGACGGCGGTGCGCCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCTG 48712 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 48713 AGGGCACCA 48721 >seq436 Length=314818 Score = 143 bits (158), Expect = 4e-28 Identities = 158/205 (77%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 || |||| |||| | | || ||||||||| | || |||||| | |||||||| || || Sbjct 93203 CGTTGCCCGTGGAGTTGATAGGCATGAACAGCGCC-CTCATGAGGCAGTACATCGAGTTC 93261 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 || ||| ||||| |||||| || |||||||||| ||||||| ||| ||| ||||| Sbjct 93262 TG-CGCTGACCGACTGCTCATGGAGCTCGGCTGC-GAGAAGCGATACAACGCGGTCAACC 93319 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| ||||||||| ||||||| ||| |||||||||| ||||| |||||| |||| Sbjct 93320 CATTCGACTGGATGGAGATGATCTCCCTCCAGGGCAAGACTAACTTCTTCGAGAAGCGCG 93379 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGT 1456772 | || |||||| |||| |||| || Sbjct 93380 TGGGGGAGTACAGCAAGTCCGGGGT 93404 Score = 136 bits (150), Expect = 6e-26 Identities = 196/273 (72%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 1455938 AGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACG 1455997 ||||| |||| || ||| | | ||| |||| || | ||||| || | || |||| Sbjct 91756 AGAACTTGGCGAGCAACTTCAGCAGCGAGATCCAGCTGTCCGAGGCTCGGTGTTTCTACG 91815 Query 1455998 GGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCT 1456057 ||||||||||||| ||||| ||||||||| || |||| || || |||||||||| Sbjct 91816 GGTTCCAGATCGCGATCGAGAACATCCACAGCGAGGTCTACAGCCTTCTCATCGACACCT 91875 Query 1456058 ACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGG 1456117 |||||||||| ||| |||||| |||||||| ||| || || || ||||||| | Sbjct 91876 ACGTCAAGGAGGCGGCGGAGAAGACGCACCTCTTCAACGCGATGGAGACCGTGCCGTGCG 91935 Query 1456118 TGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTG 1456176 || || ||| || |||||| || |||| |||| ||| ||| | || ||| | Sbjct 91936 TGCGGCGAAAAGCTAGGTGGGCGCTGCGGTGGTGCAACCCGGA---CCTGGCCAGCTTCG 91992 Query 1456177 CCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGG 1456208 ||||||| |||||| ||| || | |||||||| Sbjct 91993 CCGAGCGCATCGTCGCCTTCGCGGCCGTCGAGG 92025 Score = 100 bits (110), Expect = 4e-15 Identities = 120/158 (76%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||| ||||| ||| ||||| || |||||| ||||||| || Sbjct 91119 TGGCAAATGTAC-AAGAAGGCGGAGGCTAGCTTCTGGACGGCAGAGGAGCTCGACCT-GG 91176 Query 1455839 CGC----CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||| || |||||| | || | |||||||||||| || ||| | |||| Sbjct 91177 CGCACGACTACAAGG---ACTGGGAGAGCCTCACCGACGACGAGCGACACTTCGTGAAGC 91233 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||| | | |||| ||||| |||||||| |||||||| Sbjct 91234 ACGT-GTTGGCTTTCTTCGCTGCCAGCGACGGCATCGT 91270 >seq64 Length=648304 Score = 98.7 bits (108), Expect = 1e-14 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||| || || || || || ||||||||||| || || ||||||||||| |||||||||| Sbjct 136205 AGGGAATTTTCTTTTCCGGAAGTTTCTGCGCGATTTTCTGGCTCAAGAAACGCGGCCTCA 136264 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| | | ||| |||||||| | |||||||||||||| Sbjct 136265 TGCCCGG-CCTGACCTTCAGCAACGAGATGATCAGTCGCGACGA 136307 >seq1903 Length=75883 Score = 91.5 bits (100), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1818183 AAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGC 1818242 |||| |||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| Sbjct 42629 AAGTCGACGCGCTTGCCCATGAGGTTGCCTCGGATCCTCCCCTCCTTCCCCTTGAGGCGC 42570 Query 1818243 TCCACGAGGCCCTTGGTGGGCTTGCCCGACCGTTGGGTCGACTGC 1818287 | | ||| ||| ||||||||||||||| || ||| |||| Sbjct 42569 TGCCGGAGCGTCTTCAGGGGCTTGCCCGACCGCTGCGTCTCCTGC 42525 >seq5475 Length=4812 Score = 89.7 bits (98), Expect = 7e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 |||||||| || ||||||||| | ||||||||||| |||| | | ||||||||| || Sbjct 3663 GAGACCGGAACTCCCTACATGCTGTACAAGGACGCGTGCAACTTCAAGAGCAACCAGAAG 3722 Query 262184 AACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 ||||||||||| | | ||||||| ||||| ||||||||| ||| Sbjct 3723 AACCTGGGCACGATCAAGTCCTCCAACCTCTGCACGGAGATCGTCGAGT 3771 >seq134 Length=529874 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 |||||| |||||||| | |||||| |||| || || | ||||||||||| || || || Sbjct 449403 CTGCTTCCCCATGGCGGACTGGTACGTGTTTCGGGGGGACTGGTTGTGGTCGGGGAAGGG 449462 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGA-GCAGCGGGTGGACCTCGACGTGCGT 1601472 ||||||||||||||| |||| || || | || | ||||||| |||| ||| || Sbjct 449463 GATGATGGACGCGCACACGCCGAGGATCATGCTG-GGGTGGATCTCGCAGTGGGT 449516 >seq85 Length=604401 Score = 87.8 bits (96), Expect = 3e-11 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 ||||||||| |||||| ||| || || |||||||| | | |||| | || Sbjct 503324 CAGTGCGCGAGCATCTCGAAGTTCGCGGGGGGCATCGGCGTGTCGATCCACAGCATCCGA 503383 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 ||| | | | | ||||||||||| |||||||| ||||||| || ||||| ||||| Sbjct 503384 GCCACCGACTCGTACGTGGCGGGATCCAACGGCTCTGCCAACGGTCTCGTGCCGATGCTG 503443 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || || |||||||| || |||||||| |||||| Sbjct 503444 AGGGTCTTCAACGACACCGCCCGCTACGTGGACCAG 503479 >seq3831 Length=12952 Score = 86.0 bits (94), Expect = 9e-11 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 698565 ATGGCCTCGTGGTCATAGTGGTAGGTCGCTGACTTGGAGAGGAGGAAAACATACTCGTGG 698624 || |||||||| || |||| || || | || || || | |||| | |||| || Sbjct 10676 ATAGCCTCGTG-TCGTAGTAATACTTCTCGCTTTTTGACAGCAAAAAAATAAACTCATGC 10734 Query 698625 GCGCGCGTCGGACGGTCGCGCACGGACTCGGGCTGGCAGTTGGGCTTGTGCCATATGATG 698684 | ||| ||||| || || | ||| || ||||||||||| || |||| ||| | ||| Sbjct 10735 GAGCGAGTCGGGCGATCCCTTACGCTTTCCGGCTGGCAGTTCGGTTTGTTCCAAACAATG 10794 Query 698685 TCGGAGCGCAGGTACCAGCCGTCGGCCTGGAGGGCAAAGGCCACGCGCCACGGCAGCCCA 698744 || | |||||| ||||||||||| || || | |||||||| | ||| || | ||| Sbjct 10795 TCAGTGCGCAGATACCAGCCGTCTGCTTGCAAAGCAAAGGCGATCTTCCAAGGAACGCCA 10854 Query 698745 ATGAGGTCCTTGGCCTTGAGGCCC 698768 || | ||| || | ||| || ||| Sbjct 10855 ATCAAGTCTTTTGGCTTCAGTCCC 10878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176525786354974