Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2386 154 2e-32 seq4387 98.7 1e-15 seq444 89.7 6e-13 >seq2386 Length=46605 Score = 154 bits (170), Expect = 2e-32 Identities = 498/716 (70%), Gaps = 58/716 (8%) Strand=Plus/Plus Query 181217 CATCTGGGAAG---CCGCATCACTTGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAA 181271 ||| ||||||| | || ||| |||| || ||| | || || ||||| |||| |||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 181272 CTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGG-AACT 181330 | | || || || ||| | || || || | | ||||| |||||||||| |||| Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCGTGAATGGGAAACT 37373 Query 181331 CTCTTAC--CGCTTAGGTATGCGCCCCTGGATCTGT-GTTGCATACTCTGCTCCAGTCG- 181386 ||| | ||||||||||| ||| ||| | | || |||| ||||| || ||| | Sbjct 37374 TAGCTACGGTGTTTAGGTATGCG-TCCTTGATGTTTCGTAGCATTCTCTG-TCAAGTAGA 37431 Query 181387 CAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA-GGTTCTTTCT-CTGACGC 181444 ||||||| ||||| ||||| ||| | || |||| | |||| ||| ||||| |||||| Sbjct 37432 CAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGACGG 37489 Query 181445 AATGCCACTTGGCAT--CTCTGGTA-CATTCAACTACATGCT-TGTTTTCC--AAGC-AG 181497 |||| ||| || ||||||| |||| |||| |||| | ||||||| |||| | Sbjct 37490 TATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCG 37549 Query 181498 AGCACAACATTCTGATGCA--TCCCTTCCA-CATGTTGGGTGTCGCAGG-TGTATTTGGT 181553 | || ||| || | ||||| | ||||| ||| ||||| || || ||| ||| || Sbjct 37550 AACATAAC-TTTTAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGT-TTTCGT 37607 Query 181554 GGTTCACTGT-TCAGTGCAAT-GCACGGTTCTT-TGGT--TACATCTTCACTCGTCCGTG 181608 |||| | | | ||||||| || ||| ||||||| | || | || || | | |||| Sbjct 37608 GGTT-ATTATATCAGTGCTATCGCATGGTTCTTCTAGTAATTCAAGTT---TAATACGTG 37663 Query 181609 AGACG-ACTGAAACTGAGTCACAGAACTATGGTTAC-AAGTTCGGACA-AGA-AGAAGAG 181664 | ||| | |||| ||| || || || |||||| || |||||||| ||| |||||| Sbjct 37664 AAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAA 37722 Query 181665 ACATACAACATCGTCGCCGCCCA-CGGTTACTTTGG--TCGCTTGATCTT--CCAATA-- 181717 || |||||||| || || || || ||||||||||| || || ||||| || || Sbjct 37723 ACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTAGC 37782 Query 181718 TGCTTCATT-CAACA-ACTC-ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 181774 ||| || ||||| |||| | | | || |||||||| || |||||||||| ||| Sbjct 37783 AGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGT 37841 Query 181775 TGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAA 181834 ||| || ||||| || || | || || | || |||||||||||| | ||||| || | Sbjct 37842 TGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGG-TTTAG 37899 Query 181835 CTTCAACCAGTCTATCCTCGA-CGGACAAGGACGTGTCCTCAACACCTGGGCAGAC 181889 ||| ||||||||| | | || | | |||| ||||| | | || ||||| ||| Sbjct 37900 CTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGAC 37955 >seq4387 Length=9414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 161447 GCGGGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTC 161506 |||||||||||||||||||||||||||| || |||| |||||||||||||||| | || Sbjct 1831 GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAATGTCGTCGGTTCGAATC 1772 Query 161507 CGATCTCCCGCTTT 161520 ||||| |||||||| Sbjct 1771 CGATCACCCGCTTT 1758 >seq444 Length=311324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 161450 GGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTCCGA 161509 ||||||| ||||||||||| |||||| || |||| ||||||||||||||||| | ||||| Sbjct 3933 GGTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTCGGTTCGACTCCGA 3874 Query 161510 TCTCCCGCT 161518 || |||||| Sbjct 3873 TCACCCGCT 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614515212390560