Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2386 140 5e-28 >seq2386 Length=46605 Score = 140 bits (154), Expect = 5e-28 Identities = 478/692 (69%), Gaps = 66/692 (10%) Strand=Plus/Plus Query 174729 GAATGGCTCTAC-AACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 |||||| | ||| || ||||| |||| |||| || | || ||||| ||| | |||||| Sbjct 37284 GAATGGTTATACCAATGGTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGC 37342 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATC------GTTTAGGTATGAGACC 174841 | | ||||| ||||| |||||| |||| | ||||||||||| | || Sbjct 37343 TTCTTGTTGGATGGGTCGTGAATGGGAAA---CTTAGCTACGGTGTTTAGGTATGCGTCC 37399 Query 174842 TTGGATCTGT-GTAGCATACTCTGCACCAGTTG-CAGCAGCTTCAGCAGTATTCCTAGTC 174899 || ||| | | ||||||| ||||| | ||| | ||||||| || || ||||| ||| | Sbjct 37400 TT-GATGTTTCGTAGCATTCTCTG-TCAAGTAGACAGCAGC-TCTGCGGTATT-CTAATT 37455 Query 174900 TATCCTTTCGGTCAA-GGTTCATTCT-CAGACGCGATGCCCTTGGGTAT--CTCTGG-AA 174954 || |||| | |||| ||| |||| | |||| |||| | ||||| ||||| | Sbjct 37456 TACCCTTCGGATCAATGGTAGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAG 37515 Query 174955 CATTCAACTACATG-TTGGTCTTCC--AAGC-AGAACATAACATCTTGATGCACC--CCT 175008 |||| |||| |||| | ||| |||| |||| ||||||||| | || ||||||| | Sbjct 37516 CATTTAACTTCATGATCGGTTTTCCAAAAGCTCGAACATAAC-TTTTAATGCACCTGGAT 37574 Query 175009 TCCA-CATGTTGGGAGTCGCAGG-TGTCTTCGGTGGTTCATTGT-TCTCAGCGAT-GCAT 175064 |||| ||| || || || || ||| ||| |||||| ||| | || || || |||| Sbjct 37575 TCCATAATGGCTGGTGTTGCTGGATGTTTTC-GTGGTT-ATTATATCAGTGCTATCGCAT 37632 Query 175065 GGTTC-ACTTGTTACCTCTTCA---CTTGTCCGTGAGAC-AACTGAAACTGAGTCACAGA 175119 ||||| || || | |||| | | ||||| || || |||| ||| || | Sbjct 37633 GGTTCTTCTAGTAA----TTCAAGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTA 37688 Query 175120 ACTATGGTTAC-AAGTTCGGCCA-AGA-AGAAGAGACCTATAACATCGTGGCAGCCCAT- 175175 | || |||||| || ||||| || ||| |||||| || || ||||| || || || ||| Sbjct 37689 A-TACGGTTACAAAATTCGGACAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATA 37747 Query 175176 GGCTACTTCGG--TCGTTTGATCTT--CCAATA--CGCTTCATT-CAACA-ACTC---AC 175224 || ||||| || ||||| ||||| || || ||| || ||||| |||| | Sbjct 37748 GGTTACTTTGGGTGCGTTTAATCTTGCGCAGTAGCAGCTAGTTTACAACAGACTCTAGAG 37807 Query 175225 GCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTG 175284 ||| | || |||||| | | ||||||||| | || || || ||||| || || | | Sbjct 37808 GCT--TTACATTTCTTCCTTG-CGCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAG 37864 Query 175285 GTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGA-C 175343 ||| || || |||||||| ||| | |||||||| | ||| |||||||||||| | || Sbjct 37865 GTG-TTGTACTATGGCATTTAACTTAAATGGTTT-AGCTTTAACCAGTCTGTTGTAGATA 37922 Query 175344 GGACAAGGTAGAGTATTGAACACCTGGGCGGA 175375 | | ||||| | ||||| | || ||||| || Sbjct 37923 GTAGAAGGTCGTGTATTAACGACATGGGCTGA 37954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729808002852760