Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2386 172 7e-38 seq4387 98.7 1e-15 seq444 89.7 6e-13 >seq2386 Length=46605 Score = 172 bits (190), Expect = 7e-38 Identities = 501/716 (70%), Gaps = 58/716 (8%) Strand=Plus/Plus Query 178085 CATCTGGGAAG---CCGCATCACTTGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAA 178139 ||| ||||||| | || ||| |||| || ||| | || || ||||| |||| |||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 178140 CTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA-CT 178198 | | ||||| || ||| | |||||| | | | ||||| ||||| |||||| || Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCGTGAATGGGAAACT 37373 Query 178199 TTCATACCGT--TTAGGTATGCGCCCCTGGATCTGT-GTAGCATACTCTGCTCCAGTAG- 178254 | ||| || ||||||||||| ||| ||| | | ||||||| ||||| || ||||| Sbjct 37374 TAGCTACGGTGTTTAGGTATGCG-TCCTTGATGTTTCGTAGCATTCTCTG-TCAAGTAGA 37431 Query 178255 CAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATT--TTCTGACGC 178312 ||||||| || || ||||| || | || |||| | |||| | | || | |||||| Sbjct 37432 CAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGACGG 37489 Query 178313 AATGCCACTTGGCAT--CTCTGGTA-CATTCAACTACATGCT-TGTTTTCC--AAGC-AG 178365 |||| ||| || ||||||| |||| |||| |||| | ||||||| |||| | Sbjct 37490 TATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCG 37549 Query 178366 AACACAACATTCTGATGCACC--CCTTCCA-CATGTTGGGTGTCGCAGG-TGTATTCGGT 178421 |||| ||| || | ||||||| ||||| ||| ||||| || || ||| ||| || Sbjct 37550 AACATAAC-TTTTAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTC-GT 37607 Query 178422 GGTTCACTGT-TCAGTGCAAT-GCACGGTTCTT-TGGT--TACATCTTCACTCGTTCGTG 178476 |||| | | | ||||||| || ||| ||||||| | || | || || | | |||| Sbjct 37608 GGTT-ATTATATCAGTGCTATCGCATGGTTCTTCTAGTAATTCAAGTT---TAATACGTG 37663 Query 178477 AAACG-ACTGAAACAGAATCACAGAACTATGGTTA-TAAGTTCGGACA-AGA-AGAAGAG 178532 ||||| | |||| ||||| || || ||||| || |||||||| ||| |||||| Sbjct 37664 AAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAA 37722 Query 178533 ACATACAACATCGTTGCAGCACAT-GGCTACTTCGG--TCGTTTGATCTT--CCAATA-- 178585 || |||||||| || || |||||| || ||||| || ||||| ||||| || || Sbjct 37723 ACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTAGC 37782 Query 178586 TGCTTCATT-CAACA-ACTC-ACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 178642 ||| || ||||| |||| | | | || |||||||| || |||||||||| ||| Sbjct 37783 AGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGT 37841 Query 178643 TGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAA 178702 ||| || ||||| || || | || || | || |||||||||||| | ||||| || | Sbjct 37842 TGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGG-TTTAG 37899 Query 178703 CTTCAACCAGTCCATCCTCGA-CGGACAAGGACGTGTCCTCAACACATGGGCAGAC 178757 ||| |||||||| | | || | | |||| ||||| | | |||||||| ||| Sbjct 37900 CTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGAC 37955 >seq4387 Length=9414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 156950 GCGGGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTC 157009 |||||||||||||||||||||||||||| || |||| |||||||||||||||| | || Sbjct 1831 GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAATGTCGTCGGTTCGAATC 1772 Query 157010 CGATCTCCCGCTTT 157023 ||||| |||||||| Sbjct 1771 CGATCACCCGCTTT 1758 >seq444 Length=311324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 156953 GGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTCCGA 157012 ||||||| ||||||||||| |||||| || |||| ||||||||||||||||| | ||||| Sbjct 3933 GGTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTCGGTTCGACTCCGA 3874 Query 157013 TCTCCCGCT 157021 || |||||| Sbjct 3873 TCACCCGCT 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605908646375760