Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2386 158 1e-33 >seq2386 Length=46605 Score = 158 bits (174), Expect = 1e-33 Identities = 518/745 (70%), Gaps = 59/745 (8%) Strand=Plus/Plus Query 158615 CATCTGGGAAG---CCGCATCACTTGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAA 158669 ||| ||||||| | || ||| |||| || ||| | || || ||||| |||| |||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 158670 CTCGTAGTCTTTCACTTCCTTATCGG--CATCTATGCATATATGGGACGTGAATGGG-AA 158726 | | || || || ||| | || || | ||| || | ||||| |||||||||| || Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTGCTTCT-TGT-TGGATGGGTCGTGAATGGGAAA 37371 Query 158727 CTTTCATAC--CGCTTAGGTATGCGCCCCTGGATCTGT-GTAGCATATTCTGCACCAGTC 158783 ||| ||| | ||||||||||| ||| ||| | | ||||||| |||| | ||| Sbjct 37372 CTTAGCTACGGTGTTTAGGTATGCG-TCCTTGATGTTTCGTAGCATTCTCTG-TCAAGTA 37429 Query 158784 G-CTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA-GGTTCTTTCT-CCGAT 158840 | | ||||| ||||| ||||| || | || |||| | |||| ||| ||||| | || Sbjct 37430 GACAGCAGC-TCTGCGGTATT-CTAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGAC 37487 Query 158841 GCTATGCCTCTTGGTAT--CTCTGGTA-CTTTTAACTACATGCT-TGTATTCC--AAGC- 158893 | ||||| | |||||| ||||||| | ||||||| |||| | || |||| |||| Sbjct 37488 GGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCT 37547 Query 158894 AGAACACAACATCCTTATGCACCCG--TTCCAT-ATGCTCGGTGTTGCTGG-GGTATTCG 158949 ||||| ||| | | ||||||| | |||||| ||| ||||||||||| || ||| Sbjct 37548 CGAACATAAC-TTTTAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTC- 37605 Query 158950 GTGGATCTCTTTTCTCTGCTAT-GCATGG-AAGTCTCGTTACTTCCTCACTCGTTCGTGA 159007 |||| | | | || |||||| |||||| ||| | || ||| | | ||||| Sbjct 37606 GTGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAG-TAATTCAAGTTTAATACGTGA 37664 Query 159008 AACG-ACTGAAACAGAGTCACAGAACTATGGTTAC-AAGTTCGGACA-AGA-AGAAGAAA 159063 |||| | |||| || || || || |||||| || |||||||| ||| |||||||| Sbjct 37665 AACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAA 37723 Query 159064 CATATAATATCGTCGCAGCCCAT-GGTTACTTCGG--TCGTTTGATCTT--CCAATA--C 159116 | || || || || || || ||| |||||||| || ||||| ||||| || || Sbjct 37724 CTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTAGCA 37783 Query 159117 GCTTCATT-CAACA-ACTCCCG-TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTC 159173 ||| || ||||| |||| | | || || ||||||||||| |||||||||| || Sbjct 37784 GCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGTT 37842 Query 159174 GGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAAC 159233 || || ||||| || || | || || | || |||||||| ||| | || ||||| | | Sbjct 37843 GGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT-AGC 37900 Query 159234 TTCAACCAGTCCATCCTTGATGGT-CAGGGTCGTGTGTTGAACACCTGGGCAGATGTACT 159292 || |||||||| | | ||| || | |||||||| || | || ||||| || || Sbjct 37901 TTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGACATA-- 37958 Query 159293 GAACCGTGCAGGTCT-GGGTATGGA 159316 |||||||||| | | |||||||| Sbjct 37959 TAACCGTGCAGATTTAAGGTATGGA 37983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552381564804160