Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2386 149 8e-31 seq4387 98.7 1e-15 seq444 89.7 6e-13 >seq2386 Length=46605 Score = 149 bits (164), Expect = 8e-31 Identities = 547/791 (69%), Gaps = 72/791 (9%) Strand=Plus/Plus Query 179061 CCCAAGT-TCAAACGCAA--TTGGTCTACAC--TTCTAC---CCCATCTGGGAAG---CA 179109 ||| ||| ||||| |||| ||||| | | | |||||| | ||| ||||||| | Sbjct 37212 CCCTAGTATCAAA-GCAAGTTTGGTATTCCCATTTCTACGGCCACATTTGGGAAGGGGCT 37270 Query 179110 GCATCACTCGAT-GAGTGGCTGTAT-AACGGTGGTCCTTTCCAACTGGTAGTCTTCCACT 179167 || ||| | || || ||| | || || ||||| |||| |||| | | || ||||| | Sbjct 37271 GCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAATTAATCGTATTCCATT 37329 Query 179168 TCCTTATCGG--CATCTATGCCTATATGGGACGTGAGTGGGAA-CTTTCTTACCGTCT-- 179222 || | || || | ||| || | ||||| ||||| |||||| ||| ||| || | Sbjct 37330 TCTTAATTGGTGCTTCT-TGT-TGGATGGGTCGTGAATGGGAAACTTAGCTACGGTGTTT 37387 Query 179223 AGGTATGCGTCCATGGATCTGT-GTTGCATACTCTGCACCAGTCG-CTGCTGCGAGTGCA 179280 |||||||||||| || || | | || |||| ||||| | ||| | | || || ||| Sbjct 37388 AGGTATGCGTCCTTG-ATGTTTCGTAGCATTCTCTGT-CAAGTAGACAGCAGCTC-TGCG 37444 Query 179281 GTATTCCTCGTCTATCCTTTCGGTCAA-GGTTCTTTCT-CTGATGCTATGCCTCTTGGTA 179338 |||||| | | || |||| | |||| ||| ||||| |||| | ||||| | ||||| Sbjct 37445 GTATTC-TAATTTACCCTTCGGATCAATGGTAGTTTCTGCTGACGGTATGCTTTATGGTA 37503 Query 179339 TC--TCTGGTA-CTTTTAACTACATGCTTG-TATTCCAA--GCA-GAACACAACATCCTT 179391 | ||||||| | ||||||| |||| | | | |||||| || ||||| ||| | | Sbjct 37504 TTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCGAACATAACTTT-TA 37562 Query 179392 ATGCACCCG--TTCCATA-TGCTCGGTGTTGCTGGG-GTATTCGGTGGATCTCTTTTCTC 179447 ||||||| | ||||||| || ||||||||||| || |||| ||| | | | || Sbjct 37563 ATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTCG-TGGTTATTATATCAG 37621 Query 179448 TGCTAT-GCACGGAAGT-CTCGTTACTTCCTCGCTTGTTCGTGAAAC-AACTGAGACAGA 179504 |||||| ||| || | || || | ||| | | |||||||| || ||| || Sbjct 37622 TGCTATCGCATGGTTCTTCTAGTAA-TTCAAGTTTAATACGTGAAACGAAGTGAAGTTGA 37680 Query 179505 GTCACAGAACTATGGTTATAAG-TTCGGACA-AGA-AGAAGAGACCTATAACATCGTCGC 179561 || || || ||||| || |||||||| ||| |||||| || || ||||| || || Sbjct 37681 ATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAACTTACAACATTGTAGC 37739 Query 179562 AGCACAT-GGCTACTTCGGT--CGTTTGATCTTCC--AATATGCATCCT-TTAACAACTC 179615 |||||| || ||||| || ||||| ||||| | | || ||| | || ||||| Sbjct 37740 TGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA-GCAGCTAGTTTACAACAG 37798 Query 179616 ACGCT-----CTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACT 179670 || || |||| || ||||||||||| || ||||| | || || || ||||| || Sbjct 37799 ACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGTTGGGATTTGGTTAACA 37857 Query 179671 GCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATC 179730 ||| | || || | || ||||| || ||| | || ||||| | ||| |||||||| | Sbjct 37858 GCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT-AGCTTTAACCAGTCTGTT 37915 Query 179731 CTTGACGGT-CAAGGACGTGTCCTTAAC-ACATGGGCGGACGTATTGAACCGTGCAGGTT 179788 | || || |||| ||||| ||||| |||||||| ||| ||| |||||||||| || Sbjct 37916 GTAGATAGTAGAAGGTCGTGT-ATTAACGACATGGGCTGACATAT--AACCGTGCAGATT 37972 Query 179789 T-GGGTATGGA 179798 | |||||||| Sbjct 37973 TAAGGTATGGA 37983 >seq4387 Length=9414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 155856 GCGGGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTC 155915 |||||||||||||||||||||||||||| || |||| |||||||||||||||| | || Sbjct 1831 GCGGGTGTAGCTCAGTGGTAGAGCGTCACGTTGCCAACGTGAATGTCGTCGGTTCGAATC 1772 Query 155916 CGATCTCCCGCTTT 155929 ||||| |||||||| Sbjct 1771 CGATCACCCGCTTT 1758 >seq444 Length=311324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 155859 GGTGTAGCTCAGTGGTAGAGCGTCAGTTTTCCAAACTGAATGTCGTCGGTTCAAGTCCGA 155918 ||||||| ||||||||||| |||||| || |||| ||||||||||||||||| | ||||| Sbjct 3933 GGTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTCGGTTCGACTCCGA 3874 Query 155919 TCTCCCGCT 155927 || |||||| Sbjct 3873 TCACCCGCT 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610227926717760