Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq194 107 2e-18 seq76 84.2 2e-11 >seq194 Length=468613 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 403539 TGCCACCGCGGAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 403598 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| || ||||| || |||||| | ||||||||||| || || |||| Sbjct 403599 ACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCG 403658 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | |||| | || | ||||| | || || | Sbjct 403659 GGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCA 403718 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || ||||| || || || || ||||| ||||| Sbjct 403719 CATCCAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 403767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||| || | || || || || || || |||||||| Sbjct 408261 TGCCACCGCGAAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 408320 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| || ||||| || |||||| | ||||||||||| || || |||| Sbjct 408321 ACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCG 408380 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | || | ||||| | | |||| Sbjct 408381 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCAA 408440 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || ||||| || || || || ||||| ||||| Sbjct 408441 CGTCAAGGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 408489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| |||| || ||||| || ||| Sbjct 403343 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAGCTGCTTTCCG 403402 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| | ||| Sbjct 403403 GCGAAGATGAGACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 403462 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | || ||| || || | || || | || ||||| || || Sbjct 403463 ACGCCGTCGATAGTGTCCGAGGGTTCGACATCCAAGGTGATCGTCTTACCCGTGAGGGTC 403522 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 403523 TTGACGAAGATCTGCAT 403539 >seq76 Length=624063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | ||||| || | || || || || || || |||||||| Sbjct 333878 TGCCACCGCGAAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 333819 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| |||| || ||||| || || ||| | ||||||||||| || || || | Sbjct 333818 ACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGGG 333759 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | || | ||||| | | || | Sbjct 333758 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGA 333699 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || ||||| || || || || ||||| ||||| Sbjct 333698 CGTCCAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 333650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424865380959624