Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq436 96.9 1e-14 seq821 91.5 5e-13 seq64 91.5 5e-13 seq1406 84.2 7e-11 >seq436 Length=314818 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| ||||| |||| || ||| ||| || ||||| || ||||| Sbjct 92522 TTCTGGCTGAAGAAGCGGGGACTCATGCCGGGGCTGTGCTTCAGCAACGAGCTCATCAGC 92581 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| ||||| |||||||||||||| |||||| | || | | ||| || Sbjct 92582 CGCGACGAGGGCTTGCACACGGACTTCGCCTGTCTGCTCTAC-CGAA--AATTGGTGAAC 92638 Query 443890 AAGCTGCCC 443898 ||||||||| Sbjct 92639 AAGCTGCCC 92647 >seq821 Length=203339 Score = 91.5 bits (100), Expect = 5e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 || ||||||| |||| ||| || ||||| ||||| ||||| ||||| |||||||||||| Sbjct 90669 CATTTTTACGCGTGGAAAAAGGGGCTGAAAACGGGGATGTATTACCTCCGCACCCGACCA 90610 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAG 256622 ||||||||| | |||| ||||| |||| Sbjct 90609 GCGGCCGACGCCATCCCCTTCACTGTAG 90582 >seq64 Length=648304 Score = 91.5 bits (100), Expect = 5e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 || |||||| | || || || || || |||| ||| |||||||| || ||||| ||||| Sbjct 136237 ATTTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACCTTCAGCAACGAGATGATC 136296 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||||| |||||||| ||||| ||||||||||| || Sbjct 136297 AGTCGCGACGAGGGGTTGCACTGCGACTTCGCGTG 136331 >seq1406 Length=118068 Score = 84.2 bits (92), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| |||| || ||||||||||| |||||||||||||| || ||||| || Sbjct 88173 CACTTCTACGCGTGGAAGAAGGGCCTGAAGACCGGCATGTACTACCTCCGGACCCGGCCC 88232 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 ||||||| | ||||| |||||||| Sbjct 88233 AAGGCCGACGCTATCCAGTTCACCGT 88258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588064788153515