Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1406 113 6e-20 seq185 107 2e-18 seq85 96.9 4e-15 seq5475 93.3 5e-14 >seq1406 Length=118068 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 ||||| ||| ||| ||||||||| ||| || |||||||| || ||||||||||| Sbjct 75267 TAGATCCCGGAGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCAGCTCGACATCTGCGGC 75208 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 112006 | || || || || ||||||||||| || || ||||| |||| | | |||||||| Sbjct 75207 TTGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGGGTGAAGAGCCGCTGGGACATG 75148 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 |||||| ||||| | ||| || |||| ||| ||||||||| | | || ||| Sbjct 75147 AGGTCGTACGTCTCGATGACCTTGTCGATGTTCTCCTTGTGGATGCCCACCGACACGCGC 75088 Query 112067 ATGAACATGTACTGTGGGGTTTCCA 112091 |||| ||||| ||| || | |||| Sbjct 75087 ATGATCATGTGCTGCGGCCTCTCCA 75063 >seq185 Length=475507 Score = 107 bits (118), Expect = 2e-18 Identities = 314/479 (66%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 11448 TGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGG 11507 |||| || || || || ||||| || |||||||| || ||||| || | || ||||||| Sbjct 208924 TGCGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGG 208865 Query 11508 CCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGAT 11567 | || || || | | ||||| | | | ||||| |||||||| || | || | Sbjct 208864 CGGCCATGACGATCACGCCAGGGTTCCCGACGAAGCCGTCCATCTCCACCAGCATCTGGT 208805 Query 11568 TAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTGCGTTGCTTGCCC 11626 | | || || || | ||| || || || | || | | || | |||||| ||| Sbjct 208804 TGAGGGTCTGCTCGCGCTCGTCGTT-GCCGCCAGCCATGCCGCTGCCACGTTGCCGGCCA 208746 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || || || ||||| || ||||||| || || || || || || | || || Sbjct 208745 ACGGCGTCGATCTCGTCGATGAAGATGATGCACGGCGAGTTCTCCTTCGCCTTGTCGAAC 208686 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||||| || | ||||||||| || || ||||||||||| || | | |||| Sbjct 208685 AAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCAGAC 208626 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||||| ||||| | || || || | ||| || |||| ||| ||||| || Sbjct 208625 GTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTTACCG 208566 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA--CTTCCAAAAT 11864 || || || ||| | || | |||| |||||||||||||||||| ||| | Sbjct 208565 GTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCAACCTT--GGTGT 208508 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCA 11923 | | ||||| | |||||| || ||||| | ||| || || || ||||| |||||| Sbjct 208507 ACTTATCGGGGTTCTTGAGGAAGTCCACCACCTCCTCCAGCTCGAACTTGGCTGCGTCA 208449 >seq85 Length=604401 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 || |||||||| | ||||| || || | ||||| || ||||| |||| ||||| Sbjct 522783 TCGGTGTACTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTGCCCAGGTTCTTC 522724 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||| ||||| |||||||||| |||||| | |||||||| |||||||||||||| Sbjct 522723 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTCCCCGTCTC 522668 >seq5475 Length=4812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | |||||| ||| ||||| |||| ||||| ||| Sbjct 3775 GTGTACTCGACGATCTCCGTGCAGAGGTTGGAGGACTTGATCGTGCCCAGGTTCTTCTGG 3716 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 || ||||| ||||||||| |||||||| ||||||||||| || || |||||| Sbjct 3715 TTGCTCTTGAAGTTGCACGCGTCCTTGTACAGCATGTAGGGAGTTCCGGTCTCC 3662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627927377719200