Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq185 134 2e-26 seq1406 107 2e-18 seq85 93.3 5e-14 seq436 82.4 9e-11 >seq185 Length=475507 Score = 134 bits (148), Expect = 2e-26 Identities = 281/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || || ||||| || |||||||| ||||||||||| ||||| || || ||||| || || Sbjct 208922 CGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGGCG 208863 Query 14123 GCGATGACAACGATGCCCG---TCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || ||||| | | ||| | || || | ||||| |||||||| || | || Sbjct 208862 GCCATGACGATCACGCCAGGGTTCCCG---ACGAAGCCGTCCATCTCCACCAGCATCTGG 208806 Query 14180 TTGATGGTTTGTTCGCGTTCATCATT--CG-CAGGCATACCACCCGCACTGCGTTGCTTA 14236 |||| ||| || ||||| || || || || ||| ||| || | || |||||| Sbjct 208805 TTGAGGGTCTGCTCGCGCTCGTCGTTGCCGCCAGCCATGCCGCTGCCA---CGTTGCCGG 208749 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || |||||||| || || |||||||| | ||| || || || || || || Sbjct 208748 CCAACGGCGTCGATCTCGTCGATGAAGATGATGCACGGCGAGTTCTCCTTCGCCTTGTCG 208689 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | || ||||| | | |||||| || || || ||||||||||| || | || | Sbjct 208688 AACAAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCA 208629 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | || | | ||||||||||||| | || || || | ||| || |||| ||| ||||| Sbjct 208628 G-ACGTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTT 208570 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 || ||||| || ||| | || | | ||||| |||||| |||||||| Sbjct 208569 ACCGGTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCA 208518 >seq1406 Length=118068 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 |||| || |||||||||| ||| ||| |||| | | || ||||||||||||| Sbjct 75278 TGAGCGTGTCGTAGATCCCGGAGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCAGCTCG 75219 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 |||| || ||| |||| || || ||||||||||| || || || |||||| |||| | | Sbjct 75218 ACATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGGGTGAAGAGCC 75159 Query 119470 CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529 |||||||| |||||| ||||| | ||| | |||| ||| ||| || || | Sbjct 75158 GCTGGGACATGAGGTCGTACGTCTCGATGACCTTGTCGATGTTCTCCTTGTGGATGCCCA 75099 Query 119530 TCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 119568 ||| || ||||| | ||||| || || | |||| || Sbjct 75098 CCGACACGCGCATGATCATGTGCTGCGGCCTCTCCACCA 75060 >seq85 Length=604401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 || |||||||| || ||||| ||||| | || || || || ||||||| |||||| Sbjct 522783 TCGGTGTACTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTGCCCAGGTTCTTC 522724 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || || ||| |||| ||||| |||||| |||||||||| |||||||||||||| Sbjct 522723 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTCCCCGTCTC 522668 >seq436 Length=314818 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||| || ||| ||| | |||||||| ||| |||||| || || ||||||||| || Sbjct 92611 GGCGAAGTCCGTGTGCAAGCCCTCGTCGCGGCTGATGAGCTCGTTGCTGAAGCACAGCCC 92552 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| ||||||||||||| |||||| | || || || || || ||||| || Sbjct 92551 CGGCATGAGTCCCCGCTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCCGAAAAGAAAAT 92492 Query 130135 CCCCT 130139 |||| Sbjct 92491 ACCCT 92487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618332176426120