Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq260 96.9 1e-14 seq3163 93.3 1e-13 seq3429 84.2 7e-11 >seq260 Length=407146 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || ||||| | ||||| || || || || || | ||| ||||||||||| || ||| Sbjct 18448 ATCGGGATCGACCTGGGTACGACGTACTCGTGCGTGGGTGTCTGGCAAAATGACCGCGTA 18507 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || || ||| | || ||||| || ||||| || || ||||| Sbjct 18508 GAGATCATCGCGAACGACCAGGGCAACCGTACCACGCCCTCGTACGTCGCCTTCACCGAG 18567 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | || ||||| |||| || || || | || || | | || ||| Sbjct 18568 ACCGAGCGTCTCATCGGTGACGCTGCCAAGAACCAGGTGGCGATGAACGCCACCAACACG 18627 Query 349382 GTTTTTGATGCTAAGCGACTTATTGG 349407 || || || || ||||| || || || Sbjct 18628 GTCTTCGACGCGAAGCGTCTGATCGG 18653 >seq3163 Length=20664 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/361 (68%), Gaps = 11/361 (3%) Strand=Plus/Plus Query 349536 AAGAAATTTCATCAATGGTT-TTAGTTAAAATGAAGGAAATTGCTGAAGCATAT-TTAGG 349593 |||||||||| ||||||| || ||||||||| ||| |||||||| || | ||||| Sbjct 19221 AAGAAATTTCGGCAATGGTGCTTCAAAAAAATGAAGAAAACTGCTGAAGGATTTCTTAGG 19280 Query 349594 TGAAACAGTAACTGATGCTGTTATTACT-GTACCAGCCTATTTTAATGATGCC-CAGCGT 349651 || || | || || || ||||| ||||| || || ||||| |||||| || || Sbjct 19281 GCAAGAGGTTAAAGAAGCAGTAATTACAAGTACCTGCATACTTTAACGATGCCACAACGC 19340 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || ||||| || || ||||| | ||| | ||| | | || || || || Sbjct 19341 AA-GCTACTAAAGAAGCAGGTGAAATTGCTGT-TTAGAGGTTAAACGTATTATAAACGAG 19398 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || | || || || || || ||| ||| |||||| || || Sbjct 19399 CCTACTGC-GCTGCCCTAGCCTACGGACTAGACAAACAA---GACAAAGAAATGAAAATC 19454 Query 349772 CTTATTTTTGATTTAGGTGGTGGTA-CTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 | | ||||| | |||||||| | | ||| || || |||| | | || || Sbjct 19455 GTAGTGTTTGACTGTGGTGGTGGAAACACATGACGTTTCTGTACTTGAGTTGGGCGATGG 19514 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 |||||||||| ||| | || | |||||||||||| | ||||| || || |||||||| Sbjct 19515 TGTTTTTGAAGTAAAATCTACCGATGGTGATACACACTTAGGTGGTGATGACTTTGATAA 19574 Query 349891 T 349891 | Sbjct 19575 T 19575 >seq3429 Length=16784 Score = 84.2 bits (92), Expect = 7e-11 Identities = 189/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 350369 GATGTAACTCCACTTTCGCTTGG-ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 ||||||||||||||||| ||||| || ||||| |||| || |||||| | || Sbjct 2844 GATGTAACTCCACTTTCTCTTGGTATCGGAAACCATGGGTGGCGTGATGACTAAATTAAT 2903 Query 350428 TCCTAG--AAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGAT 350485 | || ||||| ||| |||||| || ||||| ||||||| || || ||| ||| Sbjct 2904 --CGAGTCAAATACTACAATACCTAGTAAGAAGTCTGAAACTTTCTCAACTGCTGCTGAT 2961 Query 350486 AATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAAT 350545 || |||||| | |||| ||||| ||| || | || | || | || ||||| || Sbjct 2962 AACCAGCCATCTGTAA-GATTCACGTACTTCAGGGAGGGCGCCTTGGC---AAAGACAAC 3017 Query 350546 AATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCC-TAGAGGAGTTCCTCA 350604 | | ||| ||| | | | | | || ||||| ||| || || || || ||||| Sbjct 3018 AGGACGATTGTAGATTCCATCTTGA-TGGCATTCCGCCAGCACCGAAGGGGTGTACCTCA 3076 Query 350605 GATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 ||| ||||| | ||||| |||||| | |||||||| Sbjct 3077 GATCGAAGTGACATTCGACATTGATGCCAATGGTAT 3112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514995666996581