Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1406 167 3e-36 seq85 123 3e-23 seq5475 114 1e-20 seq2810 98.7 1e-15 seq821 91.5 2e-13 seq64 84.2 2e-11 >seq1406 Length=118068 Score = 167 bits (184), Expect = 3e-36 Identities = 185/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || ||||||||| |||||||| || ||| ||| |||||||| | || ||||||||| Sbjct 75283 CTGCTTGAGCGTGTCGTAGATCCCGGAGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCA 75224 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 |||||||||||| || ||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 75223 GCTCGACATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGGGTGAA 75164 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGAT 79868 || | ||| ||| || ||||||||||| |||| || || || |||||| Sbjct 75163 GAGCCGCTGGGACATGAGGTCGTACGTCTCGATGACCTTGTCGATGTTCTCCTTGTGGAT 75104 Query 79869 GCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTT 79928 ||| |||| |||||||||| | || ||| ||| |||| | || || || | |||| Sbjct 75103 GCCCACCGACACGCGCATGATCATGTGCTGCGGCCTCTCCACCACCTTGCCGTCGGCCTT 75044 Query 79929 CTGCAGG 79935 | ||||| Sbjct 75043 CAGCAGG 75037 Score = 161 bits (178), Expect = 1e-34 Identities = 184/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 19069 CCTGCAGAAGGGCTACCTCAACGAGGGTGAGACGCCTCAGTACCTTTTCATGCGAGTCGC 19128 ||||| ||||| | || ||| | || |||| ||| ||| || | ||||||| || | Sbjct 75037 CCTGCTGAAGGCCGACGGCAAGGTGGTGGAGAGGCCGCAGCACATGATCATGCGCGTGTC 75096 Query 19129 GGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGACCTGATGAGCCA 19188 ||| |||||||| || || || ||| |||||| |||||||| ||| ||| Sbjct 75097 GGTGGGCATCCACAAGGAGAACATCGACAAGGTCATCGAGACGTACGACCTCATGTCCCA 75156 Query 19189 GAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGAT 19248 | | ||||||| ||||| ||||||||||| ||||||||||| || ||| |||||||| Sbjct 75157 GCGGCTCTTCACCCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCAAGCCGCAGAT 75216 Query 19249 GTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCT 19308 ||||||||| ||||| | | |||||||| |||||||| || |||||||| ||||| Sbjct 75217 GTCGAGCTGCTTCCTGCTCACCATGAAGGAGGACAGCATCTCCGGGATCTACGACACGCT 75276 Query 19309 CAAGGAG 19315 |||| || Sbjct 75277 CAAGCAG 75283 Score = 105 bits (116), Expect = 7e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 78178 GCCTTGGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTAC 78237 ||||||| || || || | ||||||||||| ||||| || ||||||||||| |||| Sbjct 88237 GCCTTGGGCCGGGTCCGGAGGTAGTACATGCCGGTCTTCAGGCCCTTCTTCCACGCGTAG 88178 Query 78238 AGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGG 78297 | |||||| ||||||||| | | || | | ||||| || ||| | |||||| Sbjct 88177 AAGTGCATCGAGGACAGCTTGCCGAAGGACGCCTCCGCCATGTGGACGTTCATCGACTGC 88118 Query 78298 GACTGGTCGATGTACGCACCGCGGTCGGCCGCC 78330 |||||| ||||||||| || |||||||||||| Sbjct 88117 GACTGGCAGATGTACGCCCCCCGGTCGGCCGCC 88085 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20674 GGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAA 20733 ||||||||| || || || |||||| |||||| |||||| | || ||| ||||| | | Sbjct 88085 GGCGGCCGACCGGGGGGCGTACATCTGCCAGTCGCAGTCGATGAACGTCCACATGGCGGA 88144 Query 20734 TCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGAC 20793 || | | | |||||| ||| ||||| | |||| ||| | ||||| || ||||| Sbjct 88145 GGCGTCCTTCGGCAAGCTGTCCTCGATGCACTTCTACGCGTGGAAGAAGGGCCTGAAGAC 88204 Query 20794 GGGCATGTACTATCTGCGGACCCGAGCCAAGGCCAAGGCGCAGCAGGTTACCGTG 20848 ||||||||||| || |||||||| |||||||| | || ||| | |||||| Sbjct 88205 CGGCATGTACTACCTCCGGACCCGGCCCAAGGCCGACGCTATCCAGTTCACCGTG 88259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/152 (77%), Gaps = 16/152 (11%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCC- 79437 ||||||||||||||| |||||||||| | ||| |||||| || || ||| ||||| Sbjct 78569 CTCCATGAAGAGGTC-GGGATCCACATG--CGTAGAAGAGTTCC--GC--CGCCTCTCCA 78517 Query 79438 --TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCT 79495 ||||| || |||||| ||| ||||| ||| ||| || || |||||| |||||| Sbjct 78516 GCTCGTC-CCGTGGTTCTTCTTCAG-TCGAGGAAGGCCACGAACTCTGCGTGC-ACGGCT 78460 Query 79496 CCAGATAGATG-GCGAACGAACCCTTGCGCTT 79526 | || ||||| |||| ||||||||||||||| Sbjct 78459 CGAG-TAGATCCGCGATCGAACCCTTGCGCTT 78429 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 ||| | ||||||| ||||||||| |||| |||||| ||||||||||| || |||||| Sbjct 85478 GTGAAGGGCTCGACGCTCTCGTTGTTGCCCAAGATCTGCGCGGTCGAGGCCGTGGGCATG 85419 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 || || ||||| || || |||| ||||| ||| Sbjct 85418 GGCGCCACCAGGAGGGAGTTCCTCAGACCGTGC 85386 >seq85 Length=604401 Score = 123 bits (136), Expect = 3e-23 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 |||||||||||| ||||| | ||| ||||| ||||| ||||| | ||||||||||||||| Sbjct 522775 CTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTGCCCAGGTTCTTCTGGTTGCT 522716 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 ||| ||| || ||||||||| | ||||||||||||||| |||||||||| Sbjct 522715 CTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTCCCCGTCTCAACCT 522663 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||| | |||||||| ||| ||| | ||||||| ||||| |||||||||| |||||| Sbjct 501826 GAGTCGTACGACCTCATGTCGCAGCGGCTCTTCACCCACGCCTCGCCGACCCTGTTCAAC 501885 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 ||||| ||| | |||||| |||||||||| ||| | || ||||||| |||||| Sbjct 501886 GCCGGCACGCCCCGGCCGCAGCTGTCGAGCTGCTTCTTGCTGAGCGTGAAGGAGGACAGC 501945 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || || ||||||||||| || |||||| || Sbjct 501946 ATCGAAGGCATCTACGACACCCTCAAGCAG 501975 Score = 105 bits (116), Expect = 7e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || |||||| || ||||||||||| ||||| ||| ||||||| | || |||||| Sbjct 501975 CTGCTTGAGGGTGTCGTAGATGCCTTCGATGCTGTCCTCCTTCACGCTCAGCAAGAAGCA 501916 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 |||||||| ||| || | ||| ||||||||||| |||||||||| ||||| ||||| Sbjct 501915 GCTCGACAGCTGCGGCCGGGGCGTGCCGGCGTTGAACAGGGTCGGCGAGGCGTGGGTGAA 501856 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 || | || ||| || ||||||| |||| Sbjct 501855 GAGCCGCTGCGACATGAGGTCGTACGACTCC 501825 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 79459 AGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCC 79518 || ||||| ||| | | ||||||||||||||||||||| || || ||||| || || ||| Sbjct 504486 AGATCGAGGAAGGCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCAAAGGAGCCC 504427 Query 79519 TTGCGCTTGCCGCCGCCCTG 79538 ||||||||||| |||||||| Sbjct 504426 TTGCGCTTGCCCCCGCCCTG 504407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 |||||| | ||||||||| ||||| | || |||||||| || ||||||||||| ||||| Sbjct 528302 CACGGGATGCGCAACTCGCTGCTCCTGGCCCCCATGCCCACGGCCTCGACCGCTCAGATT 528361 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 |||||||||||||| ||||||| | ||| Sbjct 528362 TTGGGGAACAACGAGAGCGTCGAGCCTTTCAC 528393 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| || ||||| ||||||||||| || ||||| ||||||||||| |||||||| ||| Sbjct 504407 CAGGGCGGGGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTCGAGCCGTGGCACGCCGAC 504466 Query 19526 GTCATGGATTTCCTCGAACT 19545 || | | |||||||| || Sbjct 504467 ATCTTCGCCTTCCTCGATCT 504486 >seq5475 Length=4812 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCA-TCTCC- 79437 ||||||||||||||| || ||||||| ||| ||||||||| || ||| ||||| Sbjct 365 CTCCATGAAGAGGTCGGGAATCCACATGGCGTAGAAGAGGTCCCG----CGCTCTCTCCA 310 Query 79438 --TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCT 79495 |||| || |||||| ||| ||||| ||| ||| ||| || ||||||||||||| Sbjct 309 GCTCGTTCCCGTGGTTCTTCTTCAGGTCGAGGAAGGCCACGATATCTGCGTGCCACGGCT 250 Query 79496 CCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCT 79537 | || |||| |||| ||||||||||||||| || || |||| Sbjct 249 CGAGGTAGACCGCGATCGAACCCTTGCGCTTCCCTCCTCCCT 208 Score = 107 bits (118), Expect = 2e-18 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 19467 AGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 |||| || || || |||||||| ||| |||| ||||||||||||| |||||||| || Sbjct 208 AGGGAGGAGGGAAGCGCAAGGGTTCGATCGCGGTCTACCTCGAGCCGTGGCACGCAGATA 267 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGA---GGAGATGCGCTGTCGCG 19583 || ||| |||||||| ||| |||||| || |||| ||||| | || || | Sbjct 268 TCGTGGCCTTCCTCGACCTGAAGAAGAACCACGGGAACGAGCTGGAGA-GAGC--GCGGG 324 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 |||||||| ||| |||||||||| ||||| ||||||||| Sbjct 325 ACCTCTTCTACGCCATGTGGATTCCCGACCTCTTCATGGAG 365 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||| ||| || ||||| | || || |||||||| ||||| | ||||||||||||||| Sbjct 3770 CTCGACGATCTCCGTGCAGAGGTTGGAGGACTTGATCGTGCCCAGGTTCTTCTGGTTGCT 3711 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 ||| ||| || ||||||||||| |||||| || || |||||||| |||| Sbjct 3710 CTTGAAGTTGCACGCGTCCTTGTACAGCATGTAGGGAGTTCCGGTCTCCACCT 3658 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 19794 AGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATC 19853 |||| |||||||| || || |||||| ||||||||||| ||| |||| || | Sbjct 3658 AGGTGGAGACCGGAACTCCCTACATGCTGTACAAGGACGCGTGCAACTTCAAGAGCAACC 3717 Query 19854 AGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAG 19906 |||||||| | ||| |||||||||| |||||||| || || || ||| | ||| Sbjct 3718 AGAAGAACCTGGGCACGATCAAGTCCTCCAACCTCTGCACGGAGATCGTCGAG 3770 >seq2810 Length=30105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 166341 ACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGA 166400 |||| |||||| | || || |||| |||||| || |||||| || || || || Sbjct 24165 ACGTGATCGAGGTGGTGCCGCTCGCGTTCATGCGGGGGCGGACGCTCAACGGGGCGGCGA 24224 Query 166401 TTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGA 166460 | ||| || ||| ||||||| |||||| | |||||||||||| | ||||| |||| Sbjct 24225 TCATCCTCGACGAGGCGCAGAACACGACGCGGTCGCAGATGAAGATGTTCCTGACGCGGA 24284 Query 166461 TCGGGGAAGGTTCGAAGATGATCGTCGCGGGTGACACGGCCCAG 166504 | ||| | || || ||| ||||||| |||| |||||| ||||| Sbjct 24285 TGGGGCACGGGTCCAAGGTGATCGTGACGGGGGACACGACCCAG 24328 >seq821 Length=203339 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || |||||| || |||||||| || ||| ||| ||||| | | || |||||||| Sbjct 106162 CTGCTTGAGAGTGTCGTAGATTCCGGAGATGCTGTCCTCCTTGGTGGTGAGGAGGAAGCA 106221 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 |||||||| ||| |||| | || ||||||| ||| || ||||||| ||||| |||| Sbjct 106222 GCTCGACAGCTGGGGGTGGCAGGTTCCGGCGTGGAACAGCGTCGGCGAGGCGTGGATGAA 106281 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||| | | ||| || | ||||||||| Sbjct 106282 CCACTTCTCGGACATGAGGTGGTACGTCTC 106311 >seq64 Length=648304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 ||||| ||||| || || ||||| || |||||||||||||| || || ||||||||| Sbjct 136207 GGAATTTTCTTTTCCGGAAGTTTCTGCGCGATTTTCTGGCTCAAGAAACGCGGCCTCATG 136266 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 || ||||||| ||| ||||||| |||| || |||||||| Sbjct 136267 CCCGGCCTGACCTTCAGCAACGAGATGATCAGTCGCGACGAGGG 136310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548433422624880