Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1406 118 1e-21 seq85 104 3e-17 seq5475 98.7 1e-15 seq821 87.8 2e-12 seq13 87.8 2e-12 seq436 82.4 8e-11 >seq1406 Length=118068 Score = 118 bits (130), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 53170 TGGTG-AGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCAC--GGTGACGA 53226 ||||| ||| ||| ||| | | |||||||||| | |||| |||||| || || | Sbjct 75060 TGGTGGAGAGGCCGCAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGAGAACA 75119 Query 53227 -CTACACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCA 53285 | ||| | ||| |||||||||||| | ||| ||| | ||| || ||||||| Sbjct 75120 TCGACAAG---GTCATCGAGACGTACGACCTCATGTCCCAGCGGCTCTTCACCCACGCCA 75176 Query 53286 CGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGG 53345 |||| ||||| |||||||| || || | || ||||||||||||||||||||| | Sbjct 75177 CGCCGACCCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGTCGAGCTGCTTCCTGCTCA 75236 Query 53346 CGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 | |||||||| ||| ||| ||| |||||||| ||||||||| || Sbjct 75237 CCATGAAGGAGGACAGCATCTCCGGGATCTACGACACGCTCAAGCAG 75283 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || || ||||||||| |||||| ||||| ||||| || ||||| | | | Sbjct 88089 GCCGACCGGGGGGCGTACATCTGCCAGTCGCAGTCGATGAACGTCCACATGGCGGAGGCG 88148 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || | | |||| || |||||||||||| |||| |||||||||||| || ||||| || Sbjct 88149 TCCTTCGGCAAGCTGTCCTCGATGCACTTCTACGCGTGGAAGAAGGGCCTGAAGACCGGC 88208 Query 55907 ATGTACTATCTGCGGACCCGCGCCAAGGCC 55936 |||||||| || |||||||| |||||||| Sbjct 88209 ATGTACTACCTCCGGACCCGGCCCAAGGCC 88238 >seq85 Length=604401 Score = 104 bits (114), Expect = 3e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||| |||||||| | ||| || | ||| || |||||| |||| |||||||||||| Sbjct 501826 GAGTCGTACGACCTCATGTCGCAGCGGCTCTTCACCCACGCCTCGCCGACCCTGTTCAAC 501885 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTG-GCGATGAAGGATGACTC 53361 || || ||| | || ||| |||||||||||||| || || ||| ||||||| ||| Sbjct 501886 GCCGGCACGCCCCGGCCGCAGCTGTCGAGCTGCTTCTTGCTGAGCG-TGAAGGAGGACAG 501944 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||| ||||||||||| || |||||| || Sbjct 501945 CATCGAAGGCATCTACGACACCCTCAAGCAG 501975 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 ||||| || || ||||||||||| || || ||||| |||||||||||||||||||||||| Sbjct 504407 CAGGGCGGGGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTCGAGCCGTGGCACGCCGAC 504466 Query 53603 ATTATGGAGTTTCTCGAGCT 53622 || | | || ||||| || Sbjct 504467 ATCTTCGCCTTCCTCGATCT 504486 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 55849 ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTAT 55908 || || |||| ||| |||||||||||| |||| |||||||||||| || |||||||| || Sbjct 531483 ACAGGGCAAGCTGACCTCGATGCACTTCTACGCGTGGAAGAAGGGCCTGAAGACGGGCAT 531542 Query 55909 GTACTATCTGCGGAC 55923 |||||| || || || Sbjct 531543 GTACTACCTCCGCAC 531557 >seq5475 Length=4812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/161 (75%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||| || |||||||||||||| ||| |||| |||||||||||||||||||||| || | Sbjct 208 AGGGAGGAGGGAAGCGCAAGGGTTCGATCGCGGTCTACCTCGAGCCGTGGCACGCAGATA 267 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGA-----AGAGATGCGCTGCCG 53658 | ||| || ||||| ||| ||| || || |||| ||||| ||| || Sbjct 268 TCGTGGCCTTCCTCGACCTGAAGAAGAACCACGGGAACGAGCTGGAGAGA-GCG----CG 322 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||||| || ||| || |||||||||| |||||||||||| Sbjct 323 GGACCTCTTCTAC-GCCATGTGGATTCCCGACCTCTTCATG 362 >seq821 Length=203339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| || | ||| | | |||| || | |||||| |||| || |||||| || Sbjct 106311 GAGACGTACCACCTCATGTCCGAGAAGTGGTTCATCCACGCCTCGCCGACGCTGTTCCAC 106252 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || ||||| ||| |||||||||||||||| | | | ||||| ||| Sbjct 106251 GCCGGAACCTGCCACCCCCAGCTGTCGAGCTGCTTCCTCCTCACCACCAAGGAGGACAGC 106192 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGA-GTGTG 53396 ||| ||| |||||||| || |||||| | ||||| Sbjct 106191 ATCTCCGGAATCTACGACACTCTCAAGCAGGTGTG 106157 >seq13 Length=1084753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 117333 CCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGT 117392 ||||||| || || || || ||||| || |||| ||| | ||||||||||||| Sbjct 42728 CCTTGCCGCCCATGAGGCGGGTGCCGAACTGGCCACCAGGCGTGAGCAGGTTCAGGTTGT 42787 Query 117393 TGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCAT 117452 || || |||| || |||| | || || || | |||| ||||||||| | Sbjct 42788 TGCTCCCTGTGTAGTTCTGGGCCATGGCCGTGATGGTTCCGTTGAGGGACGCCTCACCGT 42847 Query 117453 GGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 |||| || |||| ||||||| |||||| |||||||||||| |||||| Sbjct 42848 GGTGGTAGGCCGAGTGCTCCGACACGTACCCCGCCAGCTGAACCACCT 42895 >seq436 Length=314818 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||||| ||| ||||| ||||||| || || | ||||| ||||| ||| Sbjct 91270 ACGATGCCGTCGCTGGCAGCGAAGAAAGCCAACACGTGCTTCACGAAGTGTCGCTCGTCG 91211 Query 75204 TCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263 || ||||| | ||||| ||||| ||| ||||| || | |||||| |||||||| Sbjct 91210 TCGGTGAGGCTCTCCCAGTCCTTGTAGTCGTGCGCCAGGTCGAGCTCCTCTGCCGTCCAG 91151 Query 75264 AAACTCCCAATCGCCTTTTTGTACA 75288 || || | |||||| ||||||| Sbjct 91150 AAGCTAGCCTCCGCCTTCTTGTACA 91126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547124840654600