Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq731 123 2e-23 seq134 84.2 2e-11 >seq731 Length=224370 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29951 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 30010 || ||||||| || ||| || || | |||| |||||||| || || ||||| | Sbjct 89586 ACCTGAGCCACCAGCCGCGTCAGCAGCGCGTAGGATGCGATGTTGAACGGCACCCCCAAG 89527 Query 30011 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAAA 30069 |||||||| | | |||||| | ||| ||||| |||||||||| ||| |||||| || Sbjct 89526 CCCATGTCGGCGCTTCGCTGGTACATCTGGCACGACAGCTCTCCGTTCGC-CACGTAGAA 89468 Query 30070 CTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 ||| || | ||||||||| || || ||||| ||| | ||| || ||||||||||| Sbjct 89467 CTGGCAGAACATGTGGCACGGGGGCAGGGCCATCTTGCCGAGGTCCTTCGGGTTCCAGGC 89408 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 30166 | | | ||||||||||||||| ||||| ||||| Sbjct 89407 CGAGAGCACGATGCGCCTGTCTTCGGGGTTCGTCCTG 89371 >seq134 Length=529874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 52765 AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGA--GCCGTCC 52821 |||| ||||||||||| ||||| ||||| ||| ||||| ||| ||| | ||| | Sbjct 446540 AGATCGGCGACAAGTTCGCGTCTCGACACGG-GCAGAAGGGTACGATCGGTATGACGTAC 446482 Query 52822 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52881 | | ||||||||||||||| || ||||| | ||||| ||| ||||| | |||| Sbjct 446481 CGGC--AGGAGGACATGCCCTGGTCCATCGACGGCATCGTGCCGGACATCATCGTGAACC 446424 Query 52882 CCCACGCCTTTCCCTCCAGGATGACC 52907 |||||||| ||||| | |||||||| Sbjct 446423 CCCACGCCATTCCCAGCCGGATGACC 446398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406244405922084