Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2386 176 5e-39 >seq2386 Length=46605 Score = 176 bits (194), Expect = 5e-39 Identities = 491/695 (71%), Gaps = 60/695 (9%) Strand=Plus/Plus Query 176338 CACTTCTAC--CCA-ATCTGGGAAG---CAGCAACAGTTGAC-GAATGGCTCTAC-AATG 176389 || |||||| ||| || ||||||| | || ||||||| |||||| | ||| |||| Sbjct 37241 CATTTCTACGGCCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATG 37300 Query 176390 GAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGAC 176449 | || || |||||| | | |||||||| ||| | || ||| || || ||||| | Sbjct 37301 GTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTC 37359 Query 176450 GCCAATGGGAA-CTTAGTTACAGACT--AGGCATGCGTCCTTGGATCTGT-GTTGCATAC 176505 | |||||||| ||||| ||| | | ||| ||||||||||| || | | || |||| | Sbjct 37360 GTGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATTC 37418 Query 176506 TCTGCACCAGTAT-CTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGG-TCAAGGAT 176563 |||| | |||| | ||||| || | || ||| | | || || ||||| |||| | | Sbjct 37419 TCTGT-CAAGTAGACAGCAGCTCTG-CGGTATTC-TAATTTACCC-TTCGGATCAATGGT 37474 Query 176564 C-TTTCT-CTGATGGTATGCCTCTTGGCATT--TCAGGTA-CATTCAACTTTATGTTTG- 176617 ||||| |||| ||||||| | ||| ||| || |||| |||| ||||| ||| | | Sbjct 37475 AGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGG 37534 Query 176618 TATTCCAA--GCA-GAGCACAACATTCTAATGCACCC--ATTCCATA-TGCTTGGAGTAG 176671 | |||||| || || || ||| || ||||||||| |||||||| || ||| || | Sbjct 37535 TTTTCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTG 37593 Query 176672 CAGG-TGTGTTTGGTGGATCTCTTTTCTCAGCAAT-GCACGGAAGTCTTGTTACTTCTTC 176729 | || ||| ||| |||| | | | || || || ||| || |||| | | | ||| Sbjct 37594 CTGGATGT-TTTCGTGGTTATTATATCAGTGCTATCGCATGGT--TCTTCT-AGTAATTC 37649 Query 176730 ACTTGTTAGA---GAGAC-AACCGAAAACGAATCACAAAACTACGGTTACAAA-TTCGGA 176784 | | | | | || || || ||| ||||| || |||||||||||| |||||| Sbjct 37650 AAGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGA 37708 Query 176785 CA-AGA-AGAAGAGACATACAACATTGTAGCTGCACA-CGGTTACTTTGG--TCGTCTTA 176839 || ||| |||||| || |||||||||||||||||||| ||||||||||| ||| | | Sbjct 37709 CAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAA 37768 Query 176840 TCTT--CCAGTA--TGCTTCTTT-CAATA-ACTCAAGAAG-TCTTCACTTCTTCCTTGCA 176892 |||| ||||| ||| ||| ||| | |||| ||| | | | || ||||||||||| Sbjct 37769 TCTTGCGCAGTAGCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC- 37827 Query 176893 GCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAAC 176952 |||| || | ||| | || ||||| || || | |||| ||| || |||||||| ||| Sbjct 37828 GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTG-TTGTACTATGGCATTTAAC 37886 Query 176953 CTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGA 176987 | || ||||| | ||| ||||||||||| |||| Sbjct 37887 TTAAATGGTTT-AGCTTTAACCAGTCTGTTGTAGA 37920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603393865376640