Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq11863 116 1e-21 >seq11863 Length=592 Score = 116 bits (128), Expect = 1e-21 Identities = 183/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT---CATCGCGTTGCGCGCCTTGATCCGGC 40091 |||| ||| || |||| || ||| |||| || ||| ||| ||| || | || Sbjct 341 AGGGTTTGCCCTGCACTCGCGCCACGTCGCGGACCACCGCCTTGGCGGCCATGGT---GC 397 Query 40092 CGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGA 40151 ||||||| |||||||| ||| ||| |||||||| |||| ||||| ||| | Sbjct 398 CGAAGGTGATGATCTGTGAAACCGCTTCGCGGCCGTACTTGTCGGCCACGTAGTCGATCA 457 Query 40152 CC---TCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 || |||| ||| | || || ||| |||| ||||| ||||||||| || || |||| Sbjct 458 CCCGATCGCGGCG-CTCCATGCA--GAAATCGACGTCAAAGTCGGGCATCGATACCCGCT 514 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 |||| || || || |||||||| | ||| ||| || |||||| ||||||||||||||| Sbjct 515 CGGGATTGAGAAAGCGCTCGAACAGGAGATCGTACTGCAGTGGGTCGAGGTCGGTGATCT 574 Query 40269 CGAGGCAGTAGGCGACCA 40286 | || | |||| |||| Sbjct 575 CCAGCGCGAAGGCAACCA 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160381014383898