Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq2386 161 1e-34 >seq2386 Length=46605 Score = 161 bits (178), Expect = 1e-34 Identities = 497/706 (70%), Gaps = 61/706 (9%) Strand=Plus/Plus Query 189890 CACTTCTAC--CCA-ATCTGGGAAG---CAGCAACAGTAGAT-GAGTGGCTTTAC-AATG 189941 || |||||| ||| || ||||||| | || |||| || || ||| | ||| |||| Sbjct 37241 CATTTCTACGGCCACATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATG 37300 Query 189942 GTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAA 190001 |||| |||||||| || | | ||||| ||| | |||||| || | ||||| Sbjct 37301 GTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTC 37359 Query 190002 GACAGTGGGAA--TTATCATACAGACT--AGGTATGAGACCTTGGATCTGT-GTTGCTTA 190056 | | |||||| ||| | ||| | | ||||||| | ||||| || | | || || | Sbjct 37360 GTGAATGGGAAACTTAGC-TACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATT 37417 Query 190057 TTCAGCACCAGTAT-CTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG-GGT 190114 || | | |||| | ||||| | ||| |||||| | | ||||| | | ||| ||| Sbjct 37418 CTCTGT-CAAGTAGACAGCAGC-TCTGCGGTATTC-TAATTTACCCTTCGGATCAATGGT 37474 Query 190115 TCATTCT-CTGATGGTATGCCTTTAGGTATC--TCAGGTA-CATTCAACTTCATGTTTG- 190169 |||| |||| ||||||| || ||||| || |||| |||| ||||||||| | | Sbjct 37475 AGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGG 37534 Query 190170 TATTCCAA--GCA-GAACATAATATCCTTATGCACCC--ATTCCATA-TGGCAGGTGTAG 190223 | |||||| || |||||||| | | ||||||| |||||||| |||| ||||| | Sbjct 37535 TTTTCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTG 37593 Query 190224 CAGGTATGTTTG-GTGGAGCATTAT-TCTCTGCAAT-GCATGGTTCA-CTTGTAACATCT 190279 | || |||||| |||| ||||| || ||| || ||||||||| || |||| || Sbjct 37594 CTGG-ATGTTTTCGTGGTT-ATTATATCAGTGCTATCGCATGGTTCTTCTAGTAAT-TCA 37650 Query 190280 TCTCTAATCAGAGAAAC-AACTGGTTTAGAGTCACAGAACTATGGTTACAAGTTT-GGAC 190337 | |||| | ||||| || || | || || || || |||||||| || |||| Sbjct 37651 AGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGAC 37709 Query 190338 A-AGA-AGAAGAAACATACAACATAGTAGCTGCTCAT-GGTTACTTTGGTAGACTT--AT 190392 | ||| ||||||||| |||||||| |||||||| ||| ||||||||||| | || || Sbjct 37710 AGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAAT 37769 Query 190393 CTTCC--AGTAT--GCTTCATT-CAACA-ACTCAAGAAG-TTTACACTTCTTCTTAGCAG 190445 ||| | |||| ||| || ||||| |||| ||| | |||||| |||||| | || | Sbjct 37770 CTTGCGCAGTAGCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-G 37828 Query 190446 TATTCCCTGTAACCTGTG-TATGGTTAACATCAATGGGTATTTGCACAATGGCATTCAAC 190504 || |||| || || | | ||||||||| | | ||| || | || |||||||| ||| Sbjct 37829 CATGGCCTG-AAGTTGGGATTTGGTTAACAGCTTTAGGTGTT-GTACTATGGCATTTAAC 37886 Query 190505 TTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGAT-GCACAAGGT 190549 ||||||||||| | ||||||||||||||| || ||| | | ||||| Sbjct 37887 TTAAATGGTTT-AGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGT 37931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631322012121320