Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq11863 91.5 5e-14 >seq11863 Length=592 Score = 91.5 bits (100), Expect = 5e-14 Identities = 187/274 (68%), Gaps = 12/274 (4%) Strand=Plus/Plus Query 39349 CTTGGTCAGCTTCTCGCCGACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTT--- 39405 ||||| ||||| ||| | | | |||| ||| || |||| || ||| |||| Sbjct 315 CTTGGATAGCTTGTCGGCCAGGCCATAGGGTTTGCCCTGCACTCGCGCCACGTCGCGGAC 374 Query 39406 CATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCC 39465 || ||| ||| |||| || | |||| | || |||||||| ||| |||| ||| Sbjct 375 CACCGCCTTGGCGGCCATGGT---GCCGAAGGTGATGATCTGTGAAACCGCTTCGCGGCC 431 Query 39466 GTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTCGAT 39522 |||||| |||| ||||| |||||| | | ||| || || || ||| |||| Sbjct 432 GTACTTGTCGGCCACGTAGTCGATCACC---CGATCGCGGCGCTCCATGCAGAAATCGAC 488 Query 39523 GTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 39582 ||| | ||||||||| || || ||||| || || || || |||||||| | ||| ||| Sbjct 489 GTCAAAGTCGGGCATCGATACCCGCTCGGGATTGAGAAAGCGCTCGAACAGGAGATCGTA 548 Query 39583 AGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCG 39616 | | ||||| |||||||||||| | || ||| Sbjct 549 CTGCAGTGGGTCGAGGTCGGTGATCTCCAGCGCG 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160214640718050