Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq2944 138 9e-28 >seq2944 Length=26024 Score = 138 bits (152), Expect = 9e-28 Identities = 268/379 (71%), Gaps = 15/379 (4%) Strand=Plus/Minus Query 125924 TTATACCGCAATAGGTGCTTTAAT-AGCAGGGTGTGATTCATAATTTATCAATTCTAAA- 125981 ||| || || | ||| |||||||| ||| || || |||| |||||| |||| |||| Sbjct 10512 TTAAACTGCGACAGGGGCTTTAATTAGC-GGATGGGATTG-TAATTT-TCAAGCGTAAAA 10456 Query 125982 TCTTCATAATTAATATCAAAAATTGATTTATCTGTA---TTAATTTTTA-ATTGAGGTGG 126037 || ||| | |||| |||||| || ||||| | || || | ||| | | | ||| Sbjct 10455 TCCTCAAACTTAAAATCAAAGATAGATTTCACATTAGGGTTCAGTTTCATAGTAGGGTAT 10396 Query 126038 TAGATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATG 126097 | || |||||| | ||||| || | || || | ||| ||| ||||||||| Sbjct 10395 GGGCGCAC-ATCTCTAGCCAATTGGGTTTCTACCTGTTCAAAATGGTTGCTATAAATATG 10337 Query 126098 TGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAA-CAA 126156 ||||||||||| || || | || || |||| ||||| | ||| |||| ||| | || Sbjct 10336 GGCATCTCCAAA-GTGTGCACAAAATCTCCCAACTCAAAAC-ACACTCTTGTGCTATCAT 10279 Query 126157 GATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCAC 126216 ||| || || |||| |||||| |||||||| || || || |||||||| |||||||||| Sbjct 10278 CATG-GTAAGCAAAG-ATAACTGGCAATATTAAATGGTACGCCTAAAAAAATATCAGCAC 10221 Query 126217 TTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGT 126276 | | || |||| ||| || ||| |||| || || ||||| |||||||| |||| Sbjct 10220 TGCGCTGGTATAGTTGGCAGCTTAGTTTATTATCAGCCACATAAAACTGAAACATGGTGT 10161 Query 126277 GGCAAGGTGGTAATGCCAT 126295 ||||||| ||| ||||| Sbjct 10160 GGCAAGGCATTAAAGCCAT 10142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408532034298689