Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq731 150 2e-31 >seq731 Length=224370 Score = 150 bits (166), Expect = 2e-31 Identities = 149/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 |||||| || ||||| | |||||| | | || |||||||||||||| ||| ||| Sbjct 89377 GAACCCCGAAGACAGGCGCATCGTGCTCTCGGCCTGGAACCCGAAGGACCTCGGCAAGAT 89436 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||| || ||||||||||||| ||||||| |||||||| ||||| || |||||||| || Sbjct 89437 GGCCCTGCCCCCGTGCCACATGTTCTGCCAGTTCTACGTGGCGAACGGAGAGCTGTCGTG 89496 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 |||| | || || ||| | |||||||| || ||||||||||||||||| || || Sbjct 89497 CCAGATGTACCAGCGAAGCGCCGACATGGGCTTGGGGGTGCCGTTCAACATCGCATCCTA 89556 Query 34699 CGCTCTGCTCACG 34711 ||| ||||| ||| Sbjct 89557 CGCGCTGCTGACG 89569 Score = 150 bits (166), Expect = 2e-31 Identities = 149/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 ||| ||||| ||||| || ||||||||||||||||| || |||||||| | ||| Sbjct 89569 CGTCAGCAGCGCGTAGGATGCGATGTTGAACGGCACCCCCAAGCCCATGTCGGCGCTTCG 89510 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 || || | |||||| |||||||| || ||||| |||||||| ||||||| ||||||| Sbjct 89509 CTGGTACATCTGGCACGACAGCTCTCCGTTCGCCACGTAGAACTGGCAGAACATGTGGCA 89450 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 |||||| || |||||| ||| |||||||||||||| || | | |||||| | || Sbjct 89449 CGGGGGCAGGGCCATCTTGCCGAGGTCCTTCGGGTTCCAGGCCGAGAGCACGATGCGCCT 89390 Query 6814 GTCATCAGGGTTC 6826 ||| || |||||| Sbjct 89389 GTCTTCGGGGTTC 89377 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || |||||| |||| ||||| || || | |||| || |||| ||||||||||||||| Sbjct 85749 TTCCCGCTGTTGACCACGAAGCGCGTTTTCTGGCGCGGGGTGGCGGAGGAGCTGCTGTGG 85808 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||||| |||| ||||||| | || | ||| | | |||| | | ||||||||| Sbjct 85809 TTCGTCTCGGGGTGCACGAACGCGAACGTGCTGAAGGACAGGGGCATCCACATCTGGGAC 85868 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGAC 34366 | ||||||| |||| ||||||||| Sbjct 85869 GGGAACGGGTCGAGAGAGTTTCTGGAC 85895 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 6979 GTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTC 7038 ||||||||| |||| ||||||| |||||||||| | | |||| | | ||| | Sbjct 85895 GTCCAGAAACTCTCTCGACCCGTTCCCGTCCCAGATGTGGATGCCCCTGTCCTTCAGCAC 85836 Query 7039 CTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTA 7098 || | ||||||| |||| |||||||||||||||||||| |||| || |||| | Sbjct 85835 GTTCGCGTTCGTGCACCCCGAGACGAACCACAGCAGCTCCTCCGCCACCCCGCGCCAGAA 85776 Query 7099 CACACGTTTCGTCGTCAGCAGCGGAAA 7125 || || ||||| |||| |||||| || Sbjct 85775 AACGCGCTTCGTGGTCAACAGCGGGAA 85749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448187725087440