Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq731 129 5e-25 >seq731 Length=224370 Score = 129 bits (142), Expect = 5e-25 Identities = 163/220 (74%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 || ||||||| || ||| || || | |||| |||||||| || |||||||| | Sbjct 89586 ACCTGAGCCACCAGCCGCGTCAGCAGCGCGTAGGATGCGATGTTGAACGGCACCCCCAAG 89527 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT-CGCTCACGTAAAA 29841 |||||||| | | |||||| | ||||||||| |||||||||| ||| |||||| || Sbjct 89526 CCCATGTCGGCGCTTCGCTGGTACATCTGGCACGACAGCTCTCCGTTCGC-CACGTAGAA 89468 Query 29842 CTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| || |||| |||||||| || |||||||| || | ||| || |||||||| Sbjct 89467 CTGGCAGAACATG---TGGCACGGGGGCAGGGCCATCTTGCCGAGGTCCTTCGGGTTCCA 89411 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 29938 ||| | | | ||||||||||||||| ||||| ||||| Sbjct 89410 GGCCGAGAGCACGATGCGCCTGTCTTCGGGGTTCGTCCTG 89371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 169/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 30085 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30144 ||||| ||| ||||| || ||||| |||||||||| | | ||| | || ||| | Sbjct 85895 GTCCAGAAACTCTCTCGACCCGTTCCCGTCCCAGATGTGGATGCCCCTGTCCTTCAGCAC 85836 Query 30145 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30204 || | ||| ||| |||| |||||||||||||||||||||| | || | ||| || Sbjct 85835 GTTCGCGTTCGTGCACCCCGAGACGAACCACAGCAGCTCCTCCGCCACCCCGCGCCAGAA 85776 Query 30205 GACCCTCTTGGTCGTGAGGAG-GGGAAACTGTCC--CTTGAGGCCGTACCTCGCCTGAGA 30261 || | ||| || || | || ||||| | |||| | |||| | ||| | ||| Sbjct 85775 AACGCGCTTCGTGGTCAACAGCGGGAAGCGGTCCTGCCGCAGGCTGAACCGCATCTGGAC 85716 Query 30262 CCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTCTCCCCTGCGTTTGCCGTTTTCCAC 30321 ||||||| |||| | ||| || || || | |||||| ||||| |||||| |||| Sbjct 85715 CCCAAACTTGGATAGCGTTCCGGTTCCCGTGCGGTCTCCTCTGCGCACGCCGTTGTCCAG 85656 Query 30322 GACGT 30326 || || Sbjct 85655 GATGT 85651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406097229830722