Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq2944 123 4e-23 seq5238 89.7 8e-13 >seq2944 Length=26024 Score = 123 bits (136), Expect = 4e-23 Identities = 187/262 (71%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 ||| | |||||||| || || ||||| | | ||||| || ||| ||||| ||||| Sbjct 9778 AAAACAGACCGTACGGGCACAGGCACGCGCAGCGTTTTTGGCTACCAAATGCGTTTTAAT 9837 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 || |||||||||| ||||| | | || ||||| |||||||| || || || || Sbjct 9838 TTGCAAGAAGGTTC-CCGCTTATATCTACTAAAAAAGTTCACCTAAAATCTATAATACAC 9896 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 ||| | ||||||| | | || || || || || |||| | ||||| || || || Sbjct 9897 GAGTTATTGTGGTTTTTAAAGGA-GATACTAATATTAAGTACCTTAAAGATAATAATGTT 9955 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 | || |||||||||||||| ||| |||| || || ||||| || || ||||| | ||| Sbjct 9956 AGAAT-TGGGACGAATGGGCCGATGAAAATGGAGATTTAGGGCCTGTATACGGACACCAA 10014 Query 202082 TGGCGTAGCTGGATTGCACACA 202103 ||||| | |||| ||||| || Sbjct 10015 TGGCGCAACTGGCCTGCACCCA 10036 >seq5238 Length=5540 Score = 89.7 bits (98), Expect = 8e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 3489 CTAGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 3430 Query 4090 ACTCGAGACAACCAGCATT 4108 | | | | |||||| || Sbjct 3429 TCCCTGGCCCACCAGCTTT 3411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787871928516920