Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2944 100 1e-16 >seq2944 Length=26024 Score = 100 bits (110), Expect = 1e-16 Identities = 277/413 (67%), Gaps = 9/413 (2%) Strand=Plus/Plus Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 ||||||||||||||| ||||||||||| | | || ||||| || || | || ||||| Sbjct 9960 TTGGGACGAATGGGCCGATGAAAATGGAGATTTAGGGCCTGTATACGGACACCAATGGCG 10019 Query 51986 TAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAA- 52044 | ||| ||| ||| | | || || || | || | ||| || || Sbjct 10020 CAACTGGCCTGCACCCAACGGGAGCAT-ATAGACCAAGTACA-GCAGTTGTTGGATATGC 10077 Query 52045 TTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGG 52104 |||| || |||||||| || || ||| | |||||||||||||| ||||||| Sbjct 10078 TTAAAAAAAGCCCTGATAGCCG-CGCATGATTATTAGTGCTTGGAATGTGGCTGATTTGC 10136 Query 52105 ATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGC 52164 ||||||||| || || ||||| || | || || || ||||| ||||| ||| | Sbjct 10137 CTGATATGGCTTTAATGCCTTGCCACACCATGTTTCAGTTTTATGTGGCTGATAATAAAC 10196 Query 52165 TTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTG 52224 | ||||| | || ||||| ||| || || || || ||||| || ||||| |||| Sbjct 10197 TAAGCTGCCAACTATACCAGCGCAGTGCTGATATTTTTTTAGGCGTACCATTTAATATTG 10256 Query 52225 CCAGCTATTCCTTGCTGACGCAT-CTGATTGCTCGAGCAGTTGGCCTTGATGTTGGTGAA 52283 |||| || || ||||| || ||| |||| || | || ||| | |||| | || || Sbjct 10257 CCAGTTA-TCTTTGCTTAC-CATGATGATAGCACAAG-AGTGTGTTTTGAGTTGGGAGAT 10313 Query 52284 TTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGT 52336 || | ||| ||| || | |||||| || | ||||||| | || ||||| Sbjct 10314 TTTGTGCACACT-TTGGAGATGCCCATATTTATAGCAACCATTTTGAACAGGT 10365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190065915763470