Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2386 125 9e-24 seq12461 86.0 8e-12 >seq2386 Length=46605 Score = 125 bits (138), Expect = 9e-24 Identities = 270/376 (72%), Gaps = 26/376 (7%) Strand=Plus/Plus Query 183748 GGTGTCGCTGG-TGTCTTCGGTGGTTCTCTGTTCAGTGCAAT-GCACGGTTCT-CTGGTT 183804 ||||| ||||| ||| |||| ||||| | ||||||| || ||| |||||| || || Sbjct 37587 GGTGTTGCTGGATGTTTTCG-TGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTA 37645 Query 183805 ACTTCCTCGCTGGTTCGTGAAACCAC-TGAGTCTGAGTCACAGAACTATGGTTACAAG-T 183862 | ||| | | |||||||| | ||| ||| || || || |||||||| | Sbjct 37646 A-TTCAAGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAAT 37703 Query 183863 TCGGTCA-AGA-AGAAGAGACCTACAACATTGTCGCTGCTCAT-GGATACTTTGG--TCG 183917 |||| || ||| |||||| || ||||||||||| ||||| ||| || |||||||| || Sbjct 37704 TCGGACAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCG 37763 Query 183918 TCTGATCTT--CCAGTATGC--TTCGTTT--AACA-ATTCTCG-TTCTCTTCACTTCTTC 183969 | | ||||| ||||| || | |||| |||| | ||| | || | || |||||| Sbjct 37764 TTTAATCTTGCGCAGTA-GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTC 37822 Query 183970 CTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCA 184029 ||||| || ||||| | || || || ||||| || ||| | |||||| | ||||||||| Sbjct 37823 CTTGC-GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTGTT-GTACTATGGCA 37880 Query 184030 TTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGT-CAAGGTCGTGTCCT 184088 |||||| | ||||| |||| ||| |||||||| | | ||| || |||||||||| | Sbjct 37881 TTTAACTTAAATGG-TTTAGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATT 37939 Query 184089 GAACACCTGGGCAGAC 184104 | || ||||| ||| Sbjct 37940 AACGACATGGGCTGAC 37955 >seq12461 Length=549 Score = 86.0 bits (94), Expect = 8e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 167475 GGCATTGTCGGGGCGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTA 167534 ||||| |||||||||||||||| ||||||||||| ||||||||||| | || |||| Sbjct 94 GGCATGTTCGGGGCGTAGCTCAGCCTGGTAGAGCACCTGCTTTGGGAGCAGGGGGTCGTA 35 Query 167535 GGTTCAAATCCTATCGCCCCGA 167556 ||||| |||||| ||||||| Sbjct 34 GGTTCGAATCCTGCTGCCCCGA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621966770847240