Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq4750 95.1 1e-14 seq4604 86.0 7e-12 seq3525 82.4 9e-11 >seq4750 Length=7679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 5231 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 5290 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 5291 TCCGATATTCTCCA 5304 >seq4604 Length=8381 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 4064 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 4123 Query 17918 TCCGCTATTCTCCA 17931 |||| ||| ||||| Sbjct 4124 TCCGATATCCTCCA 4137 >seq3525 Length=15692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 |||||||||||||||||||||| ||||||||||| || |||| | ||||||||||| ||| Sbjct 8069 TAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCCCAGGTTCGAATCCTGCC 8128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596207862674320