Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq30 104 3e-17 seq61 82.4 9e-11 >seq30 Length=443502 Score = 104 bits (114), Expect = 3e-17 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 |||||||| | || || | ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 288388 CCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 288447 Query 24216 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274 || |||||||| || | |||| || || ||||||||||| || ||||| || || ||||| Sbjct 288448 TTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 288506 Query 24275 GGCAATAAG 24283 | ||| ||| Sbjct 288507 GCCAACAAG 288515 >seq61 Length=193651 Score = 82.4 bits (90), Expect = 9e-11 Identities = 192/287 (67%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 54360 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 54419 |||||||||| || || ||| |||||| | || || ||||| ||||| || | | Sbjct 57917 AGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGC 57858 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 | || || || || || | || || | ||||||||||| | |||| || | | Sbjct 57857 GCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCA 57798 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGC 54538 ||||| ||||| || || ||| || || | ||| || || || || | ||||||| Sbjct 57797 TGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTG-TGGATACCCACAGAGACACGC 57739 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | ||| ||||| || | || | ||||||| ||| | || |||| ||| || Sbjct 57738 ATGAGCATCTGCTGGGGGCGCTCGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGC 57679 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || | || || || ||||| |||| ||| ||||| || ||||| Sbjct 57678 TCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGCTCGTA 57632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719210270560