Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq91 150 2e-31 >seq91 Length=99162 Score = 150 bits (166), Expect = 2e-31 Identities = 490/743 (66%), Gaps = 26/743 (3%) Strand=Plus/Minus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || | ||| ||||| ||||| | ||| || | ||||||| | ||| ||| ||| Sbjct 43261 TACACAGACATTTCCATCTTGATGGTCTTGTGTGGCTTGTAGCCCACGAGCTCAAGATCC 43202 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAG----GATCCTGAGCCTGGGAAA 145652 || | ||||| |||| ||||| | |||| |||| ||||| | ||||| Sbjct 43201 TCGTACTTGAAGCCATCAATGTC----AGTGTTGTCAGTGTTGATCTTGAGCGTAGGAAA 43146 Query 145653 GGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTG 145712 ||| ||||| | || ||| || || ||||| ||||| || ||| | ||| Sbjct 43145 GGGGCGGGGTTCACGCAACAACTGCTCTTTGAGCGGCTCGACGTGATTTTTGTAAATGTG 43086 Query 145713 CGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCA 145771 ||| || | ||||| ||||| || |||| || | || || ||| | || | | Sbjct 43085 ACAGTCGCCAATCACGTGAATGAATTCGCCCGCGCGCAAG-CCTGTGCACTTTGCAAGGA 43027 Query 145772 TGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCG 145831 || || |||| || |||| ||| ||||| |||||||| || || || ||||| || | Sbjct 43026 GGTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAG 42967 Query 145832 AGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTG-GCACAGGAGG 145890 | |||||||||| ||||| || ||||| || | || |||||||| ||| | | | Sbjct 42966 AACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAAACATAGAACTGAGCAAAC-ATG 42908 Query 145891 TGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGC 145950 ||||||||||| || ||||| | | | | ||||||||||| || | ||||| | Sbjct 42907 TGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGGTTCCACGCCGAGAGGATCATG 42848 Query 145951 CTCCTGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCC 146009 | | | || | |||||| |||| ||| | || | | |||||||| || || Sbjct 42847 CGAC-GATCGTTGGGGTTGGTCTTAATCGTGTGCACGAGCTGCGCAAGCTGGTCGACACC 42789 Query 146010 CTGCCCCCGGTAATCTGTCTTGGA--GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGG 146067 || ||| ||| || || || | || ||| | || || ||||||| |||||| Sbjct 42788 CTTGCCCGAGTAGTC-ATCGTGCATCGT-TGTGTAGTCCGCACCAAAGTGCCGCCACTGA 42731 Query 146068 AACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGG 146127 || || |||||||| || ||||| || ||| | || || ||| | | |||| Sbjct 42730 AAACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGA 42671 Query 146128 AAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG--CCCCTCGCGGAGAGCTCATTGG 146185 | || |||||||| ||| | ||||| || | || | | || | || | || |||| Sbjct 42670 TATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTTTTCTTGCAGTG-TC-TTGG 42613 Query 146186 AGTCCGTGGACCCCCTG--ATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGAC 146243 | |||| | |||| |||||||| || ||||| ||| ||| || | ||| ||||| Sbjct 42612 CGCTCGTG--TCGCCTGACATGAACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGAC 42555 Query 146244 CCTCTTGGTGGTCAGCAGGGGGA 146266 | ||| || || || || |||| Sbjct 42554 GCGCTTCGTCGTGAGAAGCGGGA 42532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074424940880